1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagatttctgagacctgcactgcacaccatatatatatacatgatccaaaacagttcagatccttgacggccgggggaacgaatcgtttgcttgcttgctgcagTGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGATGGTGATGAGCTTCTGCGGCGGCGTGACGGCCTCTGCGGCGCACCAGTG
species | Zea mays |
transcript | GRMZM2G122897_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGCCTTGCCAGTGTCATGGCCAGCAACATCCCGACCAGCGACATCGGTG TGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGAEST: gi|71437667|gb|DR818717.1|DR818717
genomic: GCGCCTTGCCAGTGTCATGGCCAGCAACATCCCGACCAGCGACATCGGTGgtgagatttc ... cttgctgcagTGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGA
EST: GCGCCTTGCCAGTGTCATGGCCAGCAACATCCCGACCAGCGACATCGGTG TGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGA
genomic: GCGCCTTGCCAGTGTCATGGCCAGCAACATCCCGACCAGCGACATCGGTGgtgagatttc ... cttgctgcagTGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGA
aacagttcagatccttgacggccgggggaacgaatcgtttgcttgcttgctgcagTGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGATGGTGATGAGCTTCTGCGGCGGCGTGACGGCCTCTGCGGCGCACCAGTG
ccttgac putative branch site (score: 111)
cttgctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttctgagacctgcactgcacaccatatatatatacatgatccaaaacagttcagatccttgacggccgggggaacgaatcgtttgcttgcttgctgcagTGATCACTAGCGCGGAGGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGGATGGTGATGAGCTTCTGCGGCGGCGTGACGGCCTCTGCGGCGCACCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT