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gtattatttgtgctagctgaattcaacctattattgcagggttgtaaaacatgtatctgaatttttgagtatcatgtaaacccataaccttttctaatggattaactgtatatctatgtttttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTA
species | Zea mays |
transcript | GRMZM2G122135_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|6564198|gb|AW231820.1|AW231820
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|31356310|gb|CD440667.1|CD440667
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|5566949|gb|AI881860.1|AI881860
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|67034361|gb|CO462911.1|CO462911
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|24763712|gb|CA398883.1|CA398883
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|13126316|gb|BG316886.1|BG316886
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGCTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAEST: gi|20803006|gb|BQ294056.1|BQ294056
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|32941448|gb|CF046267.1|CF046267
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|211221964|gb|FL414368.1|FL414368
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|13126723|gb|BG317293.1|BG317293
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTEST: gi|32928593|gb|CF033405.1|CF033405
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGT
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAEST: gi|31361222|gb|CD445579.1|CD445579
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
EST: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAG AGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
genomic: GCCAATCAGTTATATGAGCTCTGTGAGGCTGTTGGCCCTGAGCCCACAAGgtattatttg ... ttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGA
taaacccataaccttttctaatggattaactgtatatctatgtttttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTA
gattaac putative branch site (score: 2)
tgttttt putative PPT
tatatctatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatttgtgctagctgaattcaacctattattgcagggttgtaaaacatgtatctgaatttttgagtatcatgtaaacccataaccttttctaatggattaactgtatatctatgtttttgggattagAGCTGATTTGGTGCCTGCATATGTTCGTCTCCTTCGCGATAATGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA