1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcagagcagtgccaaaccccactcctttttctgagtgtatttcaatgcgaaaccatatgatagtcatggtaagtctaatcttgtgaacatcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGAAGGAATCACAGCCCTGCAAGGAGATCCCATCCTTGCAGCTTATCAACC
species | Zea mays |
transcript | GRMZM2G121452_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|50322448|gb|CO517574.1|CO517574
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|31350060|gb|CD434417.1|CD434417
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGEST: gi|76925420|gb|DV170446.1|DV170446
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGG-GEST: gi|32858209|gb|CD997890.1|CD997890
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCTAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|33101497|gb|CF061457.1|CF061457
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCTAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|76290008|gb|DV029576.1|DV029576
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|50322447|gb|CO517573.1|CO517573
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|71447603|gb|DR828653.1|DR828653
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGGATTGGGAGATTAGGAACGGTGCTGTEST: gi|74245478|gb|DT653392.1|DT653392
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAAT-GGGAGATTAAGAACGGTGCTGT
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAN GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|74246334|gb|DT654248.1|DT654248
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|76285525|gb|DV025093.1|DV025093
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAANGCGEST: gi|32910062|gb|CF014874.1|CF014874
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCTAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|211410327|gb|FL477489.1|FL477489
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|71421222|gb|DR805345.1|DR805345
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTTTTCCAGAAGGCGEST: gi|32944421|gb|CF049240.1|CF049240
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: GTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|78123250|gb|DV541634.1|DV541634
genomic: GTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|32907102|gb|CF011915.1|CF011915
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCTAGATCTGCACGAGTACATCACTGAG GTGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|76290007|gb|DV029575.1|DV029575
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGGGEST: gi|33104279|gb|CF064239.1|CF064239
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCTAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|71444673|gb|DR825723.1|DR825723
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|31351657|gb|CD436014.1|CD436014
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|91049533|gb|EB159951.1|EB159951
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCEST: gi|76282323|gb|DV021891.1|DV021891
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGC
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|93282632|gb|EB674896.1|EB674896
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAGGAACGGTGCTEST: gi|211394133|gb|FL452938.1|FL452938
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCT
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|76014276|gb|DT941446.1|DT941446
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTTTTCCAGAAGGCGEST: gi|31352805|gb|CD437162.1|CD437162
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGEST: gi|31355614|gb|CD439971.1|CD439971
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
EST: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAG GAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACTGAGgtaaccttag ... tcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCG
atgcgaaaccatatgatagtcatggtaagtctaatcttgtgaacatcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGAAGGAATCACAGCCCTGCAAGGAGATCCCATCCTTGCAGCTTATCAACC
gtctaat putative branch site (score: 295)
atatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagagcagtgccaaaccccactcctttttctgagtgtatttcaatgcgaaaccatatgatagtcatggtaagtctaatcttgtgaacatcgttaacagGAGCACCCGGAATGGGAGATTAAGAACGGTGCTGTCTTCTTCCAGAAGGCGAAGGAATCACAGCCCTGCAAGGAGATCCCATCCTTGCAGCTTATCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - gcagtgc
- - - - - - - - - -ccactcc
- - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - tcaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatatg