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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgttgttatgtagaggggaatagatgcaccagcgtataagccaccactaatctgatgcccgcaaacttttaagtttttctttatcttgtgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG

Basic information

species Zea mays
transcript GRMZM2G120517_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120517_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g35520.1 (Oryza sativa), 3'ss of exon 5
actgttgttatgtagaggggaatagatgcaccagcgt-ataagccaccact--aatctgatgcccgcaaacttttaagtttttctttatcttgtgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG
    |      |||    ||||    ||||||||| | |||  | | | ||  || |||||||  || |||||| | ||| | |||    ||  ||| | ||||||||||||||||| ||||||| || ||||||||| ||||||| ||||| ||||| ||| ||||||||
--catataggggtatttaggaaatattgcaccagcatcatactcaatcccttaaaactgatgcttgctaactttca-gttatccttcccttttggttgctcagATGCTGGCCCAAGTGCACCTGCGGATCACTTGAGGAAGGTATTTTACAGGATGGGTCTTGATGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24934386|gb|CA452604.1|CA452604
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|71327463|gb|DR800349.1|DR800349
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|67022725|gb|CO451474.1|CO451474
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|101393103|gb|EB818482.1|EB818482
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|18181579|gb|BM382789.1|BM382789
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|60397958|gb|DN230774.1|DN230774
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|7238058|gb|AW573325.1|AW573325
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|74246091|gb|DT654005.1|DT654005
EST:     AGTTGATGTTACAGGACGTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|88753851|gb|DY537992.1|DY537992
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACTTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
EST: gi|7145161|gb|AW506642.1|AW506642
EST:     AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTG                         ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA
genomic: AGTTGATGTTACAGGACCTGAGCAGTGCCCCCCTGAGGGGAAACTTCCTGgttagtagat ... tgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactaatctgatgcccgcaaacttttaagtttttctttatcttgtgttccacagATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG
                              tttttctttatcttgt  CT-rich tract
                   aaacttttaagttttt  TA-rich tract