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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtggttgttagccattttcttcaaaactgccttgaatttcttttttaacatattttatatacactctatgttcttaaacatatgccattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG

Basic information

species Zea mays
transcript GRMZM2G119725_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211138740|gb|FL068273.1|FL068273
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAAGTATCTTGTTACTTTTACTGGTGGGGATGGG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGT-ATTGG
EST: gi|211445045|gb|FL132441.1|FL132441
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaacatattttatatacactctatgttcttaaacatatgccattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG
  ttttaac  putative branch site (score: 2)
     taacatattttatata  TA-rich tract