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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtggttgttagccattttcttcaaaactgccttgaatttcttttttaacatattttatatacactctatgttcttaaacatatgccattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG

Basic information

species Zea mays
transcript GRMZM2G119725_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148930418|gb|EE284901.2|EE284901
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: gi|149108358|gb|EE292696.2|EE292696
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTT
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTT
EST: gi|76930436|gb|DV172388.1|DV172388
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCC
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCC
EST: gi|148937093|gb|EC881269.2|EC881269
EST:     TGTCTGACACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: gi|211445045|gb|FL132441.1|FL132441
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: gi|148961302|gb|EE012027.2|EE012027
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: gi|149104738|gb|EE290190.2|EE290190
EST:     TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG                         GACCTTACTAGCGAGCCGAGGTATCTTGGTACTTTTACTG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaacatattttatatacactctatgttcttaaacatatgccattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG
  ttttaac  putative branch site (score: 2)
     taacatattttatata  TA-rich tract