1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaacccaaagggtgcagcgctgagctgtgtttgtggatactgcattgttggtatcgatagttttaaccatggcccgtgctttgcgttcctttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGCTCGCGTCGGCGAGGCACAGCGCAGACGAGAAGCGTGCCACGGCGGAGC
species | Zea mays |
transcript | GRMZM2G119426_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGEST: gi|211056289|gb|FL249722.1|FL249722
genomic: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
EST: GCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGEST: gi|211335942|gb|FL017252.1|FL017252
genomic: GCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
EST: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGEST: gi|71756985|gb|DR954922.1|DR954922
genomic: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
EST: GGGAGGGCCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGEST: gi|29946405|gb|CB816134.1|CB816134
genomic: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
EST: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGEST: gi|148970673|gb|EE021384.2|EE021384
genomic: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
EST: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGEST: gi|71440495|gb|DR821545.1|DR821545
genomic: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
EST: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAG GTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
genomic: GGGAGGACCATCAGAAAGCCCAGATAGAAGCTGAGATGAGGAAAATCGAGgttcgcagac ... tttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAG
ttgttggtatcgatagttttaaccatggcccgtgctttgcgttcctttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGCTCGCGTCGGCGAGGCACAGCGCAGACGAGAAGCGTGCCACGGCGGAGC
ttttaac putative branch site (score: 7)
ctttgcgttcctttcc putative PPT
atagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacccaaagggtgcagcgctgagctgtgtttgtggatactgcattgttggtatcgatagttttaaccatggcccgtgctttgcgttcctttcctcaagGTCGAGGTGGAGCGGATGCGTGCCCGCGCGCAAGACAAGCTGATGACCAAGCTCGCGTCGGCGAGGCACAGCGCAGACGAGAAGCGTGCCACGGCGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC