1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttctatttgttaactccaagccaagctgccataaacattttttagttctatttaaagaaaatattccagttttgatgtgcaacctttttatgtggcagGCCTTGGAAAGGTTTTCATTGGGAGGAATTCGAATTGCAGATACTCTGGTTGCACAGGGTAGGATTCTGATGTTCTGGTACTGGTCAACCTACCTTCTTC
species | Zea mays |
transcript | GRMZM2G119345_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
agttctatttaaagaaaatattccagttttgatgtgcaacctttttatgtggcagGCCTTGGAAAGGTTTTCATTGGGAGGAATTCGAATTGCAGATACTCTGGTTGCACAGGGTAGGATTCTGATGTTCTGGTACTGGTCAACCTACCTTCTTC
ttttgat putative branch site (score: 88)
cctttttat putative PPT
tatttaaagaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttctatttgttaactccaagccaagctgccataaacattttttagttctatttaaagaaaatattccagttttgatgtgcaacctttttatgtggcagGCCTTGGAAAGGTTTTCATTGGGAGGAATTCGAATTGCAGATACTCTGGTTGCACAGGGTAGGATTCTGATGTTCTGGTACTGGTCAACCTACCTTCTTC
- - - - - - - - -ccaagcc
- - - - - - - - - - - - -agctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaacc