Sequence
atgc intronic sequence ATGC exonic sequence...tgccttttcttttgttacataaatggccaatataccatgatgctgattttaattttgttactatcgcccattgataacttgagttttgatgatttattagGTACCAGTGTCCAGATCATATGAACCCTGCCGAGTTCTTGGCTGATCTCATTTCCATTGATTATGGCTCAACTGAAAGTGTACAGTCATCACAGAAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119345_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g03144.1 (Oryza sativa), 3'ss of exon 5
tgccttttcttttgttacataaatggccaatataccatgatgctgattttaat-tttgttactatcgcccattgataacttgagttttgatg------atttattagGTACCAGTGTCCAGATCATATGAACCCTGCCGAGTTCTTGGCTGATCTCATTTCCATTGATTATGGCTCAACTGAAAGTGTACAGTCATCACAGAAAAGG
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-------ctatattctatgtatactgtcaatatgctatgctgcttgtttttctgcctgctattattgcttatcaataacttgagtttgattacttcatatttttcagGTATCATTGTCCAGATCATGTGAACCCTGCTGAGTTCTTGGCTGATCTCATTTCTGTTGATTATAGTTCTGCTGAAAGTGTGCAGTCATCACGGAAAAGG
upper sequence: GRMZM2G119345_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G26160.1 (Glycine max), 3'ss of exon 5
--tgccttttcttttgttacataaatggccaatataccatgatgc-tgattttaattttgttactatcgcccattgataacttgagttttgatgatttattagGTACCAGTGTCCAGATCATATGAACCCTGCCGAGTTCTTGGCTGATCTCATTTCCATTGATTATGGCTCAACTGAAAGTGTACAGTCATCACAGAAAAGG
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aaatccttaacattgtctgtgtatatattatttattcttttatctgtgacttctttactgtttgttttg---aataattggttgatacttgtccatgtaacagGTACCAGTGTCCAGATCATATAAATCCTGCTGAATTTTTGGCTGATCTAATATCCATAGACTACAGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGG
upper sequence: GRMZM2G119345_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G41110.1 (Glycine max), 3'ss of exon 5
-tgccttttcttttgttacataaatggccaatataccatgatgctgattttaattttgttactatcgcccattgataacttgagttttgatgatttattagGTACCAGTGTCCAGATCATATGAACCCTGCCGAGTTCTTGGCTGATCTCATTTCCATTGATTATGGCTCAACTGAAAGTGTACAGTCATCACAGAAAAGG
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aaaaccttaacattgt-atgtgcatatattatttaatcttttatctgtgacttctttactgtttgttctgaataattggttggtaactgtccatgtaacagGTACCAATGTCCAGATCATATAAATCCTGCTGAATTTTTGGCTGATCTTATATCCATAGACTACAGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttaattttgttactatcgcccattgataacttgagttttgatgatttattagGTACCAGTGTCCAGATCATATGAACCCTGCCGAGTTCTTGGCTGATCTCATTTCCATTGATTATGGCTCAACTGAAAGTGTACAGTCATCACAGAAAAGG
ttttgatgatttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgccttttcttttgttacataaatggccaatataccatgatgctgattttaattttgttactatcgcccattgataacttgagttttgatgatttattagGTACCAGTGTCCAGATCATATGAACCCTGCCGAGTTCTTGGCTGATCTCATTTCCATTGATTATGGCTCAACTGAAAGTGTACAGTCATCACAGAAAAGG
tgccttt
- - - - -ttttgtt
- - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - gatgctg