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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaatatccttttagagaatggaatttatgggatgttgctggagacagccttaaaagattttctgtgatgtacaaataacttggtcatatgtgatcacagAACCTAAAAGCAAGGAAAACGCTGCGGCCGATGATGACCCCATAACAAGGCTACAGCGAGCGGCCGGTACTGCCATTTCGGCAGCTGCAGTGAAGGCCAA

Basic information

species Zea mays
transcript GRMZM2G119261_T03
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211328939|gb|FL451158.1|FL451158
EST:     GTCTAGTATCCAACAGCATGGGTGCAAACAAGCTGGAAATGGCAACACTG                         AACCTAAAAGCAAGGAAAACGCTGCGGCCGATGATGACCCCATAACAAGGC
genomic: GTCTAGTATCCAACAGCATGGGTGCAAACAAGCTGGAAATGGCAACACTGgtacttcatt ... gtgatcacagAACCTAAAAGCAAGGAAAACGCTGCGGCCGATGATGACCCCATAACAAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagccttaaaagattttctgtgatgtacaaataacttggtcatatgtgatcacagAACCTAAAAGCAAGGAAAACGCTGCGGCCGATGATGACCCCATAACAAGGCTACAGCGAGCGGCCGGTACTGCCATTTCGGCAGCTGCAGTGAAGGCCAA
                            aaataac  putative branch site (score: 2)
     ttaaaagattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agaatatccttttagagaatggaatttatgggatgttgctggagacagccttaaaagattttctgtgatgtacaaataacttggtcatatgtgatcacagAACCTAAAAGCAAGGAAAACGCTGCGGCCGATGATGACCCCATAACAAGGCTACAGCGAGCGGCCGGTACTGCCATTTCGGCAGCTGCAGTGAAGGCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG