1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA
species | Zea mays |
transcript | GRMZM2G119169_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|30704734|gb|CD058588.1|CD058588
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|9952004|gb|BE638587.1|BE638587
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: GATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211383659|gb|FL000696.1|FL000696
genomic: GATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|101386822|gb|EB815428.1|EB815428
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTCTCACACATTCAAGTGAACEST: gi|32934714|gb|CF039526.1|CF039526
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|37390893|gb|CF632684.1|CF632684
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211372347|gb|FL430779.1|FL430779
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|33097211|gb|CF057171.1|CF057171
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|5525695|gb|AI861588.1|AI861588
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: AGAGCAATGCTGAG GTAAAAGGTTTTGATGTCGATACCCTCTATGTGTCCCCCATTCAAGTG-AC
genomic: AGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
gacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA
tgctaat putative branch site (score: 2)
tttctctgct putative PPT
taatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC