Sequence
atgc intronic sequence ATGC exonic sequencegtacagttacttctgagtttgtagttttggctggtttgcacctatctaattcttgcacttgcttgtgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 3'ss of exon 5
gtacagttacttctgagtttgtagttttg-gctggtttgcac-------ctatctaa---ttcttgcacttgcttgtgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
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gtacggccactgctgatttgagagtggtatgctaatctgcaggctgcagctatctaatatttcttgtacctggttgttcagGTTGAGTTCAATAAGGCTGCACAATCATTGACAGACGCAATTATTCCCTCTACCCAAAGAAGAGTTGCTTTGAGTCGATTGATTAAG
upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 4
---gtacagttacttctgagtttg-tagttttggctggtttgcacctatctaattcttgcacttgcttgtgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
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gttagaaattgttttatgtgtatgacagttctcttaagttagtacaaaacatagtgatgtctgtttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAG
upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA03G36550.1 (Glycine max), 3'ss of exon 4
---gtacagttacttctgagtttg-tagttttggctggtttgcacctatctaattcttgcacttgcttg--tgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
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gttggaaattgttttatgtgtatgacagttctcttaagtttgtacacaacatagagtgatgtctgtttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGATTGGTTAAG
upper sequence: GRMZM2G118467_T03 (Zea mays), 3'ss of exon 5
lower sequence: AT3G58560.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacagttacttctgagtttgtagttttggctggtttg---cacctatctaattcttgcacttgcttgtgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
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gtatgtcttagttttctcctgttacct-atctaattaggcccatttgctaaatcattgggct-gctcatccagGTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTTTCCCAGAAGAAAAATGCTTTGAATCGGTTGGTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttgtagttttggctggtttgcacctatctaattcttgcacttgcttgtgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
atctaat putative branch site (score: 3)
cttgctt putative PPT
tatctaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacagttacttctgagtttgtagttttggctggtttgcacctatctaattcttgcacttgcttgtgtagGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC