1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgtgaggttcttgcagaaaatgtagttacctttcatgaagcatagcacacaattttccctaaatgttgatattatctgtacatttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
species | Zea mays |
transcript | GRMZM2G118316_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|74237423|gb|DT645337.1|DT645337
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCCGTGAAATATATGATCAGEST: gi|149101262|gb|EE187374.2|EE187374
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGC-GTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|78088193|gb|DV516586.1|DV516586
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|93017256|gb|EB642776.1|EB642776
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|211523404|gb|FL361945.1|FL361945
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGATGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATSAGEST: gi|71757145|gb|DR955082.1|DR955082
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|211149678|gb|FL347659.1|FL347659
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTA-CCGTGCCTATGAA GTTTTGAAAGACAAATGACA-GCGTGAAATATATGATCAGEST: gi|71771526|gb|DR969463.1|DR969463
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAA-TGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|71427931|gb|DR808981.1|DR808981
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|91049687|gb|EB160105.1|EB160105
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|34391167|gb|CF384395.1|CF384395
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGATGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|211533908|gb|FL308317.1|FL308317
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGATGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|91049823|gb|EB160241.1|EB160241
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAGEST: gi|71769072|gb|DR967009.1|DR967009
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
EST: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAG GTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
genomic: AAGATGCTGATGCAGAAAAAACATTTCAAGAAGTTAACCGTGCCTATGAGgtgtgaggtt ... catttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
tgaagcatagcacacaattttccctaaatgttgatattatctgtacatttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
catttttc CT-rich tract
taaatgttgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgaggttcttgcagaaaatgtagttacctttcatgaagcatagcacacaattttccctaaatgttgatattatctgtacatttttcagGTTTTGAAGGACAATGACAAGCGTGAAATATATGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG