Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttctggaatttggctatggcatagtggacagagtatgaaatgacaacatcagggcatttgtatttaactaagttgtttcaacattttccttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT

Basic information

species Zea mays
transcript GRMZM2G117786_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117786_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g33440.1 (Oryza sativa), 3'ss of exon 5
-----ttttctggaatttggctatggcatagtggacagagtatgaaatga-caacatcagggcatttgtatttaactaagttgtttcaacattttccttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT
     | |  |     |||        ||  |   | | |  | |  |||   ||||    | || |  |   ||||||| ||  || |||||||      || |||| |||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
agatatatcttacgtcttgaactgttaatgcttatctgcgatttatttgaatgacatttctgtatatagaaacaactaaggtggatctacatttt------tttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCATTCCTGCAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT

upper sequence: GRMZM2G117786_T01 (Zea mays), 3'ss of exon 5
lower sequence: AT3G25860.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------ttttctg--gaatttggcta--tggcatagtggacagagtatgaaatgacaacatc-agggcatttg--tat-ttaac--taa-gttgtttcaacattttccttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT
                          || |||  |  |||||  |             | | ||| | ||||   |  | | |  || ||||  |||  ||||  |||  ||||  |    || |  | ||  ||||| ||||| ||||| |||||  | ||||| || || ||||| ||||| || ||||| ||||| ||||||||||| |||||| |||| || || || || |
gtaagttttattttgacttaataaacttcctgatgggtttggtgaatcacttcgacttagaaagtttaaaatacgattagctatagcttttggctatgctaacagtaacattgtcgctttgttgttatgttggcagGTGAATGTGACTGCAGATCATCGCATTGTGTATGGAGCTGACTTGGCTGCTTTTCTCCAAACCTTTGCAAAGATCATTGAGAATCCAGATAGTTTGACCT

upper sequence: GRMZM2G117786_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv01s0011g03380.t01 (Vitis vinifera), 3'ss of exon 5
ttttctggaatttggctatggcatagtggacagagtatgaaatgacaacatcagggcatttgtatttaactaagttgt----ttcaacattttccttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT
     |  || ||| ||        | |||      |  ||||     |         ||| | | || | ||    |    |  |  ||    | |||||||||| ||||| || ||||||||| | ||| | || |||||||| |||||||| || || || || |||||||||||  ||||| | || || ||||| || |
----gtctaacttgtcttcttttctggggaggagacaccaaattcttcctaggaattttttttttgtagcaaaacactgaactgaattatgaatcctttttcagGTAAATGTTACAGCTGATCACCGAATTATCTATGGTGCTGACTTGGCAGCCTTCCTTCAGACCTTTGCAAAGATCGTTGAGAACCCAGAAAGCTTGACAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5895843|gb|AW037089.1|AW037089
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|91049207|gb|EB159625.1|EB159625
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|5936720|gb|AW059988.1|AW059988
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTC-CTGCTG-TC-CAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|5770188|gb|AI973362.1|AI973362
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|91869380|gb|EB400357.1|EB400357
EST:     CAGTTGTGGCTGATAAAGATGGNNNNNNNAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|6526785|gb|AW216060.1|AW216060
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|32932202|gb|CF037014.1|CF037014
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|110529248|gb|EE033432.1|EE033432
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|4885756|gb|AI676876.1|AI676876
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|149108974|gb|EE189934.2|EE189934
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|5108390|gb|AI740103.1|AI740103
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|32932221|gb|CF037033.1|CF037033
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|71767883|gb|DR965820.1|DR965820
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|38687553|gb|CK144584.1|CK144584
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|31354698|gb|CD439055.1|CD439055
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|6466738|gb|AW191398.1|AW191398
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|5325071|gb|AI783262.1|AI783262
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|91053207|gb|EB163625.1|EB163625
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|60396288|gb|DN229157.1|DN229157
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|76013819|gb|DT940989.1|DT940989
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|91056736|gb|EB167154.1|EB167154
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|71763414|gb|DR961351.1|DR961351
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|74236495|gb|DT644409.1|DT644409
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|88750427|gb|DY534568.1|DY534568
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|30088033|gb|CB886238.1|CB886238
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|148960322|gb|EE153578.2|EE153578
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|24768545|gb|CA403674.1|CA403674
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|149085129|gb|EE174634.2|EE174634
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|78021875|gb|DV490262.1|DV490262
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|76016286|gb|DT943456.1|DT943456
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|78083530|gb|DV511923.1|DV511923
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
EST: gi|213174219|gb|FM184063.1|FM184063
EST:     CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTG                         GTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 83

GGAGCTATTATGGCTGTTGGAGCCTCGAAACCTACAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 81

GGAGCTATTATGGCTGTTGGAGCCTCGAAACCTACAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 55

GGAGCTATTATGGCTGTTGGAGCCTCGAAACCTACAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 160

GGAGCTATTATGGCTGTTGGAGCCTCGAAACCTACAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtg ... cttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacatcagggcatttgtatttaactaagttgtttcaacattttccttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT
                  atttaac  putative branch site (score: 160)
                                tttcaacattttcctt  putative PPT
            atttgtatttaactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttctggaatttggctatggcatagtggacagagtatgaaatgacaacatcagggcatttgtatttaactaagttgtttcaacattttccttttttcagGTCAATGTCACTGCTGATCACAGGATTGTATACGGTGCTGATTTGGCAGCATTTCTACAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
ttttctg
- - - - - - - - - - - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg