Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttatgtatgcctatactgttgtgtttctttggttgtatggcgtgaaatagctttttgactgtaagctgatatctatgacatcaatttggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT

Basic information

species Zea mays
transcript GRMZM2G117544_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117544_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 3'ss of exon 5
----ttttttatgta---tgcctatactgttgtgtttctttggttgtatggcgtgaaatagctttttgactgtaagctgatatctatgacatcaatttggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT
     |||  ||| |   |  ||  |   | || |||   |  | || |||  |     |||  | | |   | |  |  | ||| | |||    | |    |||||||||| |||||||| |||||||| ||||| |||||  ||||||| ||||||||||| || ||||| || |||||||| |||||||||||  ||||
gttagtttacatgaaaactatctgcagaatggtattttacttatagtttggtctccttgagcactgtaaacatgacatttt-tctgtcacaattttctttggtgaagGAACCGGAAGAACTATTCGAGACGATCTCACAAGCGCTGCAGGCTTCTGTTGATCGAGATTGCCTGAGTGGCTGGGGTGGTTATGTTCTCCTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89247888|gb|DY619674.1|DY619674
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60356716|gb|DN223689.1|DN223689
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|71429028|gb|DR810078.1|DR810078
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|148995894|gb|EE035134.2|EE035134
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32844693|gb|CD984374.1|CD984374
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGGT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|76288304|gb|DV027872.1|DV027872
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|76288303|gb|DV027871.1|DV027871
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|37379861|gb|CF626698.1|CF626698
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCTTTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|89758446|gb|DY687621.1|DY687621
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|71429029|gb|DR810079.1|DR810079
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|88758274|gb|DY542415.1|DY542415
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|94476825|gb|EB705783.1|EB705783
EST:     CTTCAGAGTCACTTTATGGTGGTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60395143|gb|DN228012.1|DN228012
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|88754192|gb|DY538333.1|DY538333
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60398269|gb|DN231085.1|DN231085
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|148987000|gb|EE030820.2|EE030820
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32848246|gb|CD987927.1|CD987927
EST:     CTTCAGAGTCAGTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32844036|gb|CD983717.1|CD983717
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|67012342|gb|CO441091.1|CO441091
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACACTCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|161592540|gb|EY962985.1|EY962985
EST:     TTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGACCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTG
genomic: TTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAG-CCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTG
EST: gi|211034562|gb|FL157508.1|FL157508
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|89247887|gb|DY619673.1|DY619673
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32845419|gb|CD985100.1|CD985100
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|211263410|gb|FL474910.1|FL474910
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60337320|gb|DN204293.1|DN204293
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|88758273|gb|DY542414.1|DY542414
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaatagctttttgactgtaagctgatatctatgacatcaatttggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT
                           atatctat  TA-rich tract