1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccaccccggcaaatgcggagaggctgctttgaacctgggacctagtgattcagtgagatagctctttgaaataacgctcattatttcattgcttttgcagTTCATCCTGAATCTTGGAATCCGATGTGGTCTGTTGCAAGGTACACATATACCAATAACTAGCTTATTACATGAACAGTAATGTTTTTTTGGAAGACATA
species | Zea mays |
transcript | GRMZM2G116919_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tgattcagtgagatagctctttgaaataacgctcattatttcattgcttttgcagTTCATCCTGAATCTTGGAATCCGATGTGGTCTGTTGCAAGGTACACATATACCAATAACTAGCTTATTACATGAACAGTAATGTTTTTTTGGAAGACATA
aaataac putative branch site (score: 552)
ttgctttt putative PPT
attatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaccccggcaaatgcggagaggctgctttgaacctgggacctagtgattcagtgagatagctctttgaaataacgctcattatttcattgcttttgcagTTCATCCTGAATCTTGGAATCCGATGTGGTCTGTTGCAAGGTACACATATACCAATAACTAGCTTATTACATGAACAGTAATGTTTTTTTGGAAGACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
ccacccc
- - - - -caaatgc
- - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - gaacctg
- - - - - - - - - - - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt