1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aataactggacagcggtagatgttttctttagtatcatgcctttttgagctaaaactgtcatgtgtgtgattatggcacctgattgaaaccatgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACCACAAAGCTTGACAAG
species | Zea mays |
transcript | GRMZM2G116427_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|32869175|gb|CF008857.1|CF008857
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|21390796|gb|BQ528845.1|BQ528845
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCTCCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|21480752|gb|BQ577435.1|BQ577435
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|7227834|gb|AW566475.1|AW566475
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: AAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|14324103|gb|BG929580.1|BG929580
genomic: AAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|6851592|gb|AW352602.1|AW352602
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGNCAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|21390595|gb|BQ528644.1|BQ528644
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|21480787|gb|BQ577470.1|BQ577470
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCEST: gi|5922394|gb|AW055683.1|AW055683
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGC
EST: ATCGNCAAGGTCNCCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|22546799|gb|BU099110.1|BU099110
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|4730313|gb|AI649479.1|AI649479
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: AGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCCCTGAGCTTACEST: gi|211128611|gb|FL432588.1|FL432588
genomic: AGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGAACAGCGATTGGATYTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|21481481|gb|BQ578164.1|BQ578164
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTNGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|87154790|gb|DY399579.1|DY399579
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|22546847|gb|BU099158.1|BU099158
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACANGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|32906186|gb|CF010999.1|CF010999
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACEST: gi|7238187|gb|AW573409.1|AW573409
genomic: ATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
EST: TCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
genomic: TCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcat ... catgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTAC
tgagctaaaactgtcatgtgtgtgattatggcacctgattgaaaccatgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACCACAAAGCTTGACAAG
taaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataactggacagcggtagatgttttctttagtatcatgcctttttgagctaaaactgtcatgtgtgtgattatggcacctgattgaaaccatgctccagGCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACCACAAAGCTTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -ctggaca
- - - - - - - - - - - - - - - - -atcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacctg