1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acatcgtgcggcgtgtgtgttgctgcgtgtgctgctgtttgacgaattgctgcgcgtgcatgttttgctcgctgcgccgtatacgtacgcgcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACCTGGAGAGCATCCCGGGGGTGCTGCTGCCGCACCCGTCGTCGGCCGCGT
species | Zea mays |
transcript | GRMZM2G116185_T07 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|50330624|gb|CO525750.1|CO525750
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|93015353|gb|EB640873.1|EB640873
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|88754599|gb|DY538740.1|DY538740
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCACGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|76291868|gb|DV031436.1|DV031436
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|93016819|gb|EB642339.1|EB642339
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|78092357|gb|DV520731.1|DV520731
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|71299044|gb|DR785510.1|DR785510
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|94474694|gb|EB703652.1|EB703652
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|86473098|gb|DY239468.1|DY239468
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|101393157|gb|EB818509.1|EB818509
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|78084496|gb|DV512889.1|DV512889
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|74244543|gb|DT652457.1|DT652457
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|76011281|gb|DT938451.1|DT938451
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|149058752|gb|EE156770.2|EE156770
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|50336433|gb|CO531559.1|CO531559
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|88751941|gb|DY536082.1|DY536082
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|76910706|gb|DV163993.1|DV163993
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|71316516|gb|DR794932.1|DR794932
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|89251137|gb|DY622923.1|DY622923
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|74244764|gb|DT652678.1|DT652678
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|148933880|gb|EC877854.2|EC877854
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|71442161|gb|DR823211.1|DR823211
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|71323162|gb|DR798249.1|DR798249
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|9732759|gb|BE511511.1|BE511511
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: AGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
genomic: AGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
attgctgcgcgtgcatgttttgctcgctgcgccgtatacgtacgcgcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACCTGGAGAGCATCCCGGGGGTGCTGCTGCCGCACCCGTCGTCGGCCGCGT
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcgtgcggcgtgtgtgttgctgcgtgtgctgctgtttgacgaattgctgcgcgtgcatgttttgctcgctgcgccgtatacgtacgcgcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACCTGGAGAGCATCCCGGGGGTGCTGCTGCCGCACCCGTCGTCGGCCGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC