1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtatagatgagaaagaccagtaaatggaaaaaatgaactttgaaatgatgtcccttcctggtgtttaatgatctgagccctctcctttgacttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTT
species | Zea mays |
transcript | GRMZM2G115198_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAG GCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATEST: gi|148945132|gb|EC890330.2|EC890330
genomic: TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgttttt ... cttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
EST: AGATATCTGCCAACTCCTTTTTTCAGATTAATACAAAACAG GCGGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGGTTAAAGGAGAGEST: gi|78109730|gb|DV528146.1|DV528146
genomic: AGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgttttt ... cttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
EST: TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAG GCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
genomic: TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgttttt ... cttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
tgatgtcccttcctggtgtttaatgatctgagccctctcctttgacttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTT
ctttgac putative branch site (score: 4)
ccctctcctttgactt CT-rich tract
tttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagatgagaaagaccagtaaatggaaaaaatgaactttgaaatgatgtcccttcctggtgtttaatgatctgagccctctcctttgacttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTT
- - - - gagaaaga
- - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg