Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaattttgcctgaaattattggcagtttggcacattccttagtccttactgatgagaatttgatggcaagttatctttgtaaaaccaagctaattggctttgccattgttgcagAACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGGTAAGTAATGTGGTAATTCCTGTGCAGGTGAAGTTAT

Basic information

species Zea mays
transcript GRMZM2G113592_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113592_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g02630.1 (Oryza sativa), 3'ss of exon 5
gtaagtaattttgcctgaaattattggcagtttggcacattccttagtccttactgatgagaatttgatggcaagttatctttgtaaaaccaagctaattggctttgcca--ttgttgcagAACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGGTAAGTAATGTGGTAATTCCTGTGCAGGTGAAGTTAT
               | |  || || |  |  |    |||||   | |  ||    |  | |  | | ||| |  |||| ||||||        |  |||| ||    ||     || |||||||||||||| |||||||| ||| |||| || |||||||||| |||||| ||||||||||||                                     
--------------gtaagtttttttgttgcat----cattcacaaattattttgaactaca--tagttggta--ttatttttgtatgttacttcctattgactccagcaaacgtttacagAACTATGAGACGTCTGAGCATAGGGTCAAGCGGGAGTTTGAAGCTTATGGGCCTATTAAAAGG-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148978947|gb|EE026414.2|EE026414
EST:     CCCAATGCTACCTGGAGATCCCTACAAAACACTCTTTTGTTGCTAGACTT                         AACTAATGAGACAT
genomic: CCCAATGCTAC-TGGAGATCCATACAAAACACTCTTT-GTTGCTAGACTTgtaagtaatt ... attgttgcagAACTA-TGAGACAT
EST: gi|211227311|gb|FL251472.1|FL251472
EST:     ACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTT                         AACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTT
genomic: ACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTTgtaagtaatt ... attgttgcagAACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTT
EST: gi|91051679|gb|EB162097.1|EB162097
EST:     ACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTT                         AACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGGTATGGT
genomic: ACCCCAATGCTACTGGAGATCCATACAAAACACTCTTTGTTGCTAGACTTgtaagtaatt ... attgttgcagAACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatggcaagttatctttgtaaaaccaagctaattggctttgccattgttgcagAACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGGTAAGTAATGTGGTAATTCCTGTGCAGGTGAAGTTAT
                            agctaat  putative branch site (score: 3)
           ttatctttgtaaaa  TA-rich tract