1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaattatatataataaaagtagttaactactgcctaaaacatgataagaattgtttgtggccattatttgtcttcacattaatttcaatctcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCCCTTATAGCATTTAGGGGTCATGTGCATGGCATAGACCCATCATGGCACC
species | Zea mays |
transcript | GRMZM2G113506_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTTGAAGGAG AATCTAAAATCTGGTCTTACACTCTGGAAATTCGGTACTTTACCACCATCCEST: gi|26456626|gb|CA828209.1|CA828209
genomic: TGGTTGAAGGAGgtaatgcatt ... tcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCC
EST: CTTGGAGGAAGACAAATATCAGGGATACATATCATTTCTGGTTGAAGGAG AATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCCEST: gi|61119538|gb|DN560499.1|DN560499
genomic: CTTGGAGGAAGACAAATATCAGGGATACATATCATTTCTGGTTGAAGGAGgtaatgcatt ... tcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCC
EST: CTTGGAGGAAGACAAATATCAGGGATACATATCATTTCTGGTTGAAGGAG AATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCCEST: gi|78074285|gb|DV502719.1|DV502719
genomic: CTTGGAGGAAGACAAATATCAGGGATACATATCATTTCTGGTTGAAGGAGgtaatgcatt ... tcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCC
EST: CTTGGAGAAAGACAAATATCAGGGATACATATCATTTCTGGTTGAAGGAG AATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCC
genomic: CTTGGAGGAAGACAAATATCAGGGATACATATCATTTCTGGTTGAAGGAGgtaatgcatt ... tcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCC
aagaattgtttgtggccattatttgtcttcacattaatttcaatctcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCCCTTATAGCATTTAGGGGTCATGTGCATGGCATAGACCCATCATGGCACC
cattaat putative branch site (score: 171)
tttcaatctctttt CT-rich tract
acattaatttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattatatataataaaagtagttaactactgcctaaaacatgataagaattgtttgtggccattatttgtcttcacattaatttcaatctcttttgcagAATCTAAAATCTGGTCTTACACTCTGGAAATTTGGTACTTTACCACCATCCCTTATAGCATTTAGGGGTCATGTGCATGGCATAGACCCATCATGGCACC
- - - - - -aataaaa
- - - - - - - - - - - - - ctactgc
- - - - - - - - - - - - - - - - -ctaaaaca
- - - - - - - - - - - - - - - - - - - - - gataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt