1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tataatgcactgaagctctcatagtgtgggctatggcatttggtatcatgcgtctgtgttttcccagaatgactttacatttctattggctcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACCGCCTTTTCGAACAAGAAAACAGCGCTTTTGAAGATTATCGAGGAGTCTC
species | Zea mays |
transcript | GRMZM2G113267_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGGATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAG ATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACCEST: gi|149082649|gb|EE171854.2|EE171854
genomic: AGGTGATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAGgttggtcact ... tcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACC
EST: ATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAG ATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACCEST: gi|31357346|gb|CD441703.1|CD441703
genomic: ATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAGgttggtcact ... tcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACC
EST: AGGTGATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAG ATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACCEST: gi|71444661|gb|DR825711.1|DR825711
genomic: AGGTGATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAGgttggtcact ... tcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACC
EST: AGGTGATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAG ATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACC
genomic: AGGTGATCATGGGACCCGGTGTCCACCGAACAAGCTCTCGCCTTGAAGAGgttggtcact ... tcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACC
tcatgcgtctgtgttttcccagaatgactttacatttctattggctcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACCGCCTTTTCGAACAAGAAAACAGCGCTTTTGAAGATTATCGAGGAGTCTC
tttacatttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataatgcactgaagctctcatagtgtgggctatggcatttggtatcatgcgtctgtgttttcccagaatgactttacatttctattggctcaactgcagATCCTTGTGGACTGCAGCGGAGATGACAACGAAGAAAAGAATCCAGAAACCGCCTTTTCGAACAAGAAAACAGCGCTTTTGAAGATTATCGAGGAGTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- taatgca
- - - - -ctgaagc
- - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - catgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacattt