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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtacacattgctgcaagaaataactctagttagttaatgtatctagcgagtttttgagctaacacatagttttcaattcaatcaaaacatgaagAGGCACTACGTTTCCTCAGCTAGGGAGCTAGTAAGACTCAACGGAACAACAAAGGCACCTGTAATGAACTATGCATCAGAATCAATTCTCGGTGTGGTGA

Basic information

species Zea mays
transcript GRMZM2G113203_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113203_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g36650.1 (Oryza sativa), 3'ss of exon 6
gtcagtacacattgctgcaagaaataactctagttagttaatgtatctagcgagtttttgagct-aacacatagttttcaattcaatcaaaacatgaagAGGCACTACGTTTCCTCAGCTAGGGAGCTAGTAAGACTCAACGGAACAACAAAGGCACCTGTAATGAACTATGCATCAGAATCAATTCTCGGTGTGGTGA-------------------
          |||    ||  | || | |  |  ||| | |  | |      |  || ||| || || |  |    ||   || ||  ||    ||| ||||||||||||  ||||||| || || |||| |||| |||| ||||||||||||||||| || |||||||||||  | ||||||||||| | ||||||||                   
---------aattaaaccagtagatgaat--aaatagatcaaatgtt-----accttctgaactcaagatctcacgtttgttttaa--aacctttgacgaggcactacgtggcctcagCAAGAGATCTAGCAAGAATCAATGGAACAACAAAGGCACCAGTCATGAACTATGCGGCGGAATCAATTCTTGCTGTGGTGACCATCAGGTCTTTTGGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctagcgagtttttgagctaacacatagttttcaattcaatcaaaacatgaagAGGCACTACGTTTCCTCAGCTAGGGAGCTAGTAAGACTCAACGGAACAACAAAGGCACCTGTAATGAACTATGCATCAGAATCAATTCTCGGTGTGGTGA
                 agctaac  putative branch site (score: 2)
                              ttttcaatt  TA-rich tract