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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcaggatttagctgtattaatttgtggccctgaatggtgcaggtatggttggctcagtttctattttcaatgtccatgcagCAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCTGTGTTGTAGTTGACATTATCCCATCCGATCATTTGACATCACCACAATTGTCTCCAAAGA

Basic information

species Zea mays
transcript GRMZM2G113016_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113016_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g49040.1 (Oryza sativa), 3'ss of exon 5
gtaattcaggatttagctgtatta------atttgtggccctgaatggtgca----------ggtatggttggctcagtttctattttcaatgtccat----------------gcagCAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCTGTGTTGTAGTTGACATTATCCCATCCGAT---CATTTGACATCACCACAATTGTCTCCAAAGA
||||||| | || | ||||||         | || |     | | || |||           || ||||| | |||| || | |  || ||| |||||                |||||||||||| |||| ||| ||||| || ||||||||||| ||||| || ||||| || ||||| ||||||   | ||||||||| || || ||||| ||||   
gtaattctgcatgtggctgtagcctgtagtacttatacatgtcattgttgctcgtagtatttggcatggtggactcaattacaaactttaatatccatttttacgtttactcatgcagCAAGCTCTCAAAAAAAGTGGGCTGAAAGATGACACCACTTGTGTGGTGGTTGATATCATCCCTTCCGATTATCGTTTGACATCGCCGCAGTTGTCCCCAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71322507|gb|DR797927.1|DR797927
EST:     GCAGCGAAGCTTGTCGTTAAG                         CAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCTGTGTTGTAGTT
genomic: GCAGCGAAGCTTGTCGTTAAGgtaattcagg ... gtccatgcagCAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCTGTGTTGTAGTT
EST: gi|110532386|gb|EE036570.1|EE036570
EST:     AGCATGCCAGAGGATTGCCTGCAGAACTGGCAGCGAAGCTTGTCGTTAAG                         CAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCCGTGTTGTAGTT
genomic: AGCATG-CAGAGGATTGCCTGCAGAACTGGCAGCGAAGCTTGTCGTTAAGgtaattcagg ... gtccatgcagCAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCTGTGTTGTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccctgaatggtgcaggtatggttggctcagtttctattttcaatgtccatgcagCAAGCTCTGAAAACAAGCGGGCTAAAGGATGACACCACCTGTGTTGTAGTTGACATTATCCCATCCGATCATTTGACATCACCACAATTGTCTCCAAAGA
                               tttctattttcaat  TA-rich tract