1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggacagcaaccggcatccaatcgcctagttgatttcctcctgcatttcgccttccttttggaactggggctgcaggactgaagctgcaaccgtgtggctgacttgtctcctgtactcccgcgtcgggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACACCTGGATCGAAAGCGACACCAAGCTCATCCACAACACGCAGATGGTTAA
species | Zea mays |
transcript | GRMZM2G112072_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCAT GCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACAEST: gi|94479774|gb|EB708732.1|EB708732
genomic: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCATgtaaggacag ... ggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACA
EST: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCAT GCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACAEST: gi|87155656|gb|DY400445.1|DY400445
genomic: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCATgtaaggacag ... ggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACA
EST: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCAT GCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACAEST: gi|76937083|gb|DV175029.1|DV175029
genomic: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCATgtaaggacag ... ggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACA
EST: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCAT GCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACA
genomic: GCGCCAGATCGACTCTTGCATCACCGACCTCCCCTGCCTCGACGAGCCATgtaaggacag ... ggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACA
aagctgcaaccgtgtggctgacttgtctcctgtactcccgcgtcgggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACACCTGGATCGAAAGCGACACCAAGCTCATCCACAACACGCAGATGGTTAA
ggctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggacagcaaccggcatccaatcgcctagttgatttcctcctgcatttcgccttccttttggaactggggctgcaggactgaagctgcaaccgtgtggctgacttgtctcctgtactcccgcgtcgggctgatcagGCGTGTTTGATATGCTGGCCTACACGGACACGGACGTTGACGCTCCGGACACCTGGATCGAAAGCGACACCAAGCTCATCCACAACACGCAGATGGTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG