1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggcgtgatatggtcttgcatattcaaatgtttgtggaaacaattcatgttgtatgacaagaaagaacatgtgatttcaacttggatttattgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAG
species | Zea mays |
transcript | GRMZM2G111713_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211177445|gb|FL359118.1|FL359118
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211361987|gb|FL325579.1|FL325579
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTCTACACTAAGTGGCTGGAGAAGGACAAAGGAGEST: gi|211093125|gb|FL308869.1|FL308869
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTT-TACACTAAGTGGCTGGAGAAGGACAAAGGAG
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGEST: gi|211532039|gb|FL347052.1|FL347052
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTG
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTEST: gi|71443106|gb|DR824156.1|DR824156
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGT
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|50337823|gb|CO532949.1|CO532949
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211043460|gb|FL324042.1|FL324042
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGA-CGCATTCC-TTCTGGGAAAG ATGGTTTACACTAEST: gi|101389514|gb|EB816695.1|EB816695
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211526596|gb|FL367655.1|FL367655
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAA-GGAGGACATCAEST: gi|61119623|gb|DN560584.1|DN560584
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211208019|gb|FL322438.1|FL322438
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211140827|gb|FL324953.1|FL324953
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCTCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGEST: gi|211442630|gb|FL341621.1|FL341621
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAG
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAA-G ATGGTTTACCCTTAGTGGCTGGAGAAAGACAAAGGAGGACATCATTTTTGGEST: gi|89758224|gb|DY687488.1|DY687488
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTT-GG
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|88758133|gb|DY542274.1|DY542274
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211061706|gb|FL341836.1|FL341836
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAAGGACAA-GGAGGACATCATTTTGGEST: gi|148938688|gb|EC883024.2|EC883024
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAA-GGACAAAGGAGGACATCATTTTGG
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|71420010|gb|DR804975.1|DR804975
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|211412583|gb|FL353839.1|FL353839
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGEST: gi|148989211|gb|EE031705.2|EE031705
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAG
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|32913045|gb|CF017857.1|CF017857
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGGCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|91048124|gb|EB158542.1|EB158542
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAEST: gi|76923558|gb|DV169546.1|DV169546
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
EST: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAG ATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
genomic: TTCGTATATGAGCCGTACAGCCCACGGGAACGCATTCCCTTCTGGAAAAGgtttttcttt ... tgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGA
atgttgtatgacaagaaagaacatgtgatttcaacttggatttattgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAG
atttattgtgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgtgatatggtcttgcatattcaaatgtttgtggaaacaattcatgttgtatgacaagaaagaacatgtgatttcaacttggatttattgtgaattagATGGTTTACACTAAGTGGCTGGAGAAGGACAAAGGAGGACATCATTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG