1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaactatgatggactgtacatgttgtgtttggcaacattcattttccgacttcattcagtcatgctcactgtatttcagGATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGATCTTTGGATGAGTTACTTTGTTTTATTAATGGGGATGGAG
species | Zea mays |
transcript | GRMZM2G109725_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTACGCGAAGAAGCGGAAAGAGCTCCAGGAGCGCCAGAAGCTGAAG GATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGATCTTTGGATGAGTTAEST: gi|166495574|gb|EG073739.1|EG073739
genomic: GGTTGTACGCGAAGAAGCGGAAAGAGCTCCAGGAGCGCCAGAAGCTGAAGgtaactatga ... tgtatttcagGATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGATCTTTGGATGAGTTA
EST: GGTTGTACGCGAAGAAGCGGAAAGAGCTCCAGGAGCGCCAGAAGCTGAAG GATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGA
genomic: GGTTGTACGCGAAGAAGCGGAAAGAGCTCCAGGAGCGCCAGAAGCTGAAGgtaactatga ... tgtatttcagGATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGA
gtgtttggcaacattcattttccgacttcattcagtcatgctcactgtatttcagGATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGATCTTTGGATGAGTTACTTTGTTTTATTAATGGGGATGGAG
tgctcac putative branch site (score: 2)
attcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactatgatggactgtacatgttgtgtttggcaacattcattttccgacttcattcagtcatgctcactgtatttcagGATGTACAAGTACAAAAGGAGGAAAAAGATGAGAGATCTTTGGATGAGTTACTTTGTTTTATTAATGGGGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA