1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagtgaagtacacctatctttcatataattgaaaagtgattattttttctgaggcactaggtattagcaaactcacctcttatgtatttgtatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTATGGCTACAAAT
species | Zea mays |
transcript | GRMZM2G109677_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCGCCTGATGGAGATTEST: gi|9953363|gb|BE639946.1|BE639946
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|31611943|gb|CD568565.1|CD568565
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: GAAGAAATATGCTTCTG-TATCCGTGTCATTGCTCATACCCAG ATTA-GAAGATGAAGGG-TTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211226039|gb|FL295893.1|FL295893
genomic: GAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|67028663|gb|CO457412.1|CO457412
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|31355515|gb|CD439872.1|CD439872
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|33093760|gb|CF053754.1|CF053754
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: GAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCGCCTGATGGAGATTEST: gi|5268598|gb|AI770562.1|AI770562
genomic: GAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATEST: gi|67023430|gb|CO452179.1|CO452179
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGAT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|67018173|gb|CO446922.1|CO446922
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: TGAAGAAAT-TGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|15313062|gb|BI478539.1|BI478539
genomic: TGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAACAGAAGAAGGCTCACCTGATGGAGATTEST: gi|32912720|gb|CF017532.1|CF017532
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCGCCTGATGGAGATTEST: gi|211256710|gb|FL283521.1|FL283521
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGNGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAKAAGAAGGCTCACCTGATGGAGATTEST: gi|5268417|gb|AI770381.1|AI770381
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|22521166|gb|BU079977.1|BU079977
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|32930935|gb|CF035747.1|CF035747
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|26557715|gb|CA829950.1|CA829950
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|33100628|gb|CF060588.1|CF060588
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|22545506|gb|BU097865.1|BU097865
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211223173|gb|FL365205.1|FL365205
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: GTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211256712|gb|FL283523.1|FL283523
genomic: GTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|6637012|gb|AW261284.1|AW261284
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGTTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGNTTGAAGCAGAAGAAGGCTCTCCTGATGGAGATTEST: gi|24765393|gb|CA400552.1|CA400552
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
tttctgaggcactaggtattagcaaactcacctcttatgtatttgtatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTATGGCTACAAAT
aactcac putative branch site (score: 2)
tatctttt putative PPT
tatttgtatctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtgaagtacacctatctttcatataattgaaaagtgattattttttctgaggcactaggtattagcaaactcacctcttatgtatttgtatcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAATGGTGGTACCATTGCTGACAAGGTGGACTATGGCTACAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA