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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctattttactgctagtatctctgatgcaaatcaagtgctggtcatgctctatgttattgaatacatctcatcgaactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA

Basic information

species Zea mays
transcript GRMZM2G109383_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 5
gtacctattttactgctagtatctctgatgcaaatcaagtgctggtcatgctctatgtt-attgaatacatctcatc-gaactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA
||| |    |||      ||||||||| ||| |||||||||      ||  ||| |||| ||     || | ||||  || |||  ||||||||||| |||||||| ||||||| ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||||||||||  ||||||| ||||
gtatcacagttatgat--gtatctctgctgctaatcaagtggca-cgattttctgtgtttatcagcaacttttcatttgatcttggcagGACTTCGGAATCAAATATAACATGGAAAATGGTGGACCTGCCCCTGAATCGGTTACTGATAAGATCTTCTCTAATACAACGACAATTACTGAATATCTCA

upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 5
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------------gtacctattttactgctagtatctctgatgcaaatcaagtg-ctggtcatgctctatgttattgaatacatctcatcgaactt-tccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA
                                                         |   ||| |   |  | ||   | |  |   ||| |  |  || |        || |     ||    ||  |||    ||| | ||||| || || ||||||||||| |||| |||||| || ||||||||||||||  | || || || |||| |   || || | |||||||   || ||||  |
gtccgttctgttcttgttccatctctactgtgctatcctttcatttgaactattcgttttgtatctctttatttgttctttttttaataataagatatctagatggataataagactaagaggtgattccataccccttgtacagGATTTTGGAATCAAATACAATATGGAAAATGGAGGACCTGCTCCTGAATCAATCACTGATAAAATTTACGAGAACACTAAGACAATCAAGGAGTACCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGGCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211399579|gb|FL345595.1|FL345595
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGACATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211464475|gb|FL313832.1|FL313832
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGACCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|30088269|gb|CB886474.1|CB886474
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAAT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAAT
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAAT-CAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211514341|gb|FL311514.1|FL311514
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAG-AG                         GACTTCGGGATCAAATACCACATGGGAAATG-TGGGGCCTGCTCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGG-CCTGCTCCTGAATC
EST: gi|211520184|gb|FL353420.1|FL353420
EST:     CTGGTGGCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACCACATGGGGAAATGGTGGGCCTGCTCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGG-AAATGGTGGGCCTGCTCCTGAATC
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211354596|gb|FL343940.1|FL343940
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211160953|gb|FL361295.1|FL361295
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|32921512|gb|CF026324.1|CF026324
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTG
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTG
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|148974651|gb|EE025449.2|EE025449
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGAT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGAT
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211056237|gb|FL359926.1|FL359926
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211306566|gb|FL359152.1|FL359152
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211258211|gb|FL352267.1|FL352267
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|28930952|gb|CB334313.1|CB334313
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211353999|gb|FL313767.1|FL313767
EST:     GGTGCCTTCATCTTGACAGCGAGCCATAACCCCAG-TGGGTC-TAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGTTGGGGCCTGCTCC-GAATC
genomic: GGTGCCTTCATCTTGACAGCGAGCCATAACCC-AGGTGG-TCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGG-CCTGCTCCTGAATC
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|149109604|gb|EE190283.2|EE190283
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211157734|gb|FL360814.1|FL360814
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCC
EST: gi|60351436|gb|DN218409.1|DN218409
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211149502|gb|FL328552.1|FL328552
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     TGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCGTA-GGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAAAT
genomic: TGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCC-TAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAA-T
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGGAAATGGTGGGCCTGCTCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGG-AAATGGTGGGCCTGCTCCTGAATC
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|67025909|gb|CO454658.1|CO454658
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|211472612|gb|FL331154.1|FL331154
EST:     TGGTGCCTTTCATCT-GACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GGACT-CGGGGATCAA-TACAACATGGGAAAATGGTG
genomic: TGGTGCCTT-CATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagG-ACTTCGGG-ATCAAATACAACATGGGAAA-TGGTG
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAG                         GACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 556

GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 666

GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 515

GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 1261

GGATCAAAGGCTACTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTAAGGAGgtacctattt ... aactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaagtgctggtcatgctctatgttattgaatacatctcatcgaactttccagGACTTCGGGATCAAATACAACATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA
                                               ctttcc  CT-rich tract
                     tatgttattgaata  TA-rich tract