1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggaaaagaggatctaaactggaggcagagttgatgtcttattatttttcttatctattgatcttctcttctcaatgaagttctacttttcatatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATTGAGTACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTA
species | Zea mays |
transcript | GRMZM2G109032_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAG CCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTCACATGGTCTATTEST: gi|76289600|gb|DV029168.1|DV029168
genomic: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAGgttagggaga ... catatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATT
EST: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAG CCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATTEST: gi|91055797|gb|EB166215.1|EB166215
genomic: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAGgttagggaga ... catatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATT
EST: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAG CCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATTEST: gi|71770180|gb|DR968117.1|DR968117
genomic: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAGgttagggaga ... catatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATT
EST: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAG CCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATTEST: gi|211091484|gb|FK999632.1|FK999632
genomic: ACAGGGTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCTTTGGACAGgttagggaga ... catatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATT
EST: AGGGNTTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCCCTTTGGACAG CCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTCACATGGTCTATT
genomic: AGGG-TTTTGAAGCCAGAAGGCATCTTTGTATCAATTGCC-TTTGGACAGgttagggaga ... catatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATT
ttttcttatctattgatcttctcttctcaatgaagttctacttttcatatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATTGAGTACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTA
tattgat putative branch site (score: 30)
ttctacttttc putative PPT
ttatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaaagaggatctaaactggaggcagagttgatgtcttattatttttcttatctattgatcttctcttctcaatgaagttctacttttcatatgtcagCCACACTTTCGACGCCGATTTTTTGAAGCTCCTGAGTTAACATGGTCTATTGAGTACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTA
- gaaaagag
- - - - - - - - - -tggaggc
- - - - - - - - - - - - - - -gttgatg