Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcatgagcagatcaagtaagttcaacagtctagcatatattattagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG

Basic information

species Zea mays
transcript GRMZM2G108849_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108849_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g24550.1 (Oryza sativa), 3'ss of exon 4
cttcatgagcagatcaagtaagttcaacagtctagcatatattattagtgcctaaaaga---gcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG
                 ||||  |   |   | | |||| ||| ||| | ||   | |       |||||| ||       |||| ||||||||  |||  |  |||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||  ||||||||
-----------------gtaaactacgcgcaccaccataaattgttaatcccatgagggtttagaatgcaagatataataggtattatgtcttggttgacaatgacagGGTCACTGTGGCTCGTGTTGGGCATTTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG

upper sequence: GRMZM2G108849_T04 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA03G38520.1 (Glycine max), 3'ss of exon 5
cttcatgagcagatcaagtaagttcaacagtctagcatatattattagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG
  | ||   || ||    | |     |||   |   ||| |||   | ||  ||||||||   | | |  || |  |    | ||   |   |||||||   |||||||||||||| ||||||||||| ||||||||||| || |   |    || || |||||||||||  |  |  | 
-gtgatcctcatattttctcacactgacatctttaaatacatt--caatgt-taaaagagt--ttctagctgatcct----tcatccttgtgctgatgatt-cagGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTT

upper sequence: GRMZM2G108849_T04 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G41120.1 (Glycine max), 3'ss of exon 5
cttcatgagcagatcaagtaagttcaacagtctagcatatattattagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG
        | |   |   ||  |||  ||  ||| ||| | | | ||      ||   |  | | |||   | ||  ||  | ||   |   |||||||   |||||||||||||| ||||||||||| ||||||||||| || |   |    || || |||||||||||  |  |  | 
--------gtaatcctcatattttct-cacactaacatctttaaata-cattcaattcaa-ggttcaaagagttttcagc-tgatccttgtgctgatgatt-cagGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTA

upper sequence: GRMZM2G108849_T04 (Zea mays), 3'ss of exon 5
lower sequence: AT1G02305.1 (Arabidopsis thaliana), 3'ss of exon 5
cttcatgagcagatcaagtaagttcaacagtctagcatatattattagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG
       | |||||||  ||  |     ||| |   ||    || | |   || | | ||  ||  |||||  | ||         | | || || |      ||||||||||||| ||||| ||||| ||||||||||| || |  ||    ||| | || |||||  |    ||||||
-----gtaacagatcatttactt----gagttttatattgcataatgggttctcagacagatata-aacattttggt---------tttggtttgtt-----tagGGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATG

upper sequence: GRMZM2G108849_T04 (Zea mays), 3'ss of exon 5
lower sequence: Vv07s0005g02820.t01 (Vitis vinifera), 3'ss of exon 4
----cttcatgagcagatcaagtaagttcaacagtcta-gcatatattattagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG
    |||  |  |||  | |  ||   |   |  | ||   ||  || |  | | |  | ||    |     |  |  || |  |||    | || | |  | | | |||||||| ||||||||||||||||||||||||||||| || |  ||    || |||||||| || ||  |   ||||
gtaacttggtttgcattttatttagcgttgtccctatataaatgaatgaggaattctcagaaatttgggtttatttatttatt-tat----ttttattttttaa-atcagGGTCATTGTGGCTCTTGTTGGGCTTTTGGTGCTGTTGAATCGCTGTCAGATCGTTTTTGTATCCATTTTGGCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14191382|gb|BG833612.1|BG833612
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211436678|gb|FL284626.1|FL284626
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTKGGAACATACTTG                         ATCAAGGTCACTGT
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGT
EST: gi|211436684|gb|FL284632.1|FL284632
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|26557852|gb|CA830087.1|CA830087
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211439272|gb|FL284639.1|FL284639
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTG
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTG
EST: gi|211486047|gb|FL092399.1|FL092399
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTC
EST: gi|211436683|gb|FL284631.1|FL284631
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|76282755|gb|DV022323.1|DV022323
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|33104176|gb|CF064136.1|CF064136
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|31354590|gb|CD438947.1|CD438947
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211436676|gb|FL284624.1|FL284624
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|213184041|gb|FM183748.1|FM183748
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|13316069|gb|BG410516.1|BG410516
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTT
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTT
EST: gi|211491804|gb|FL092419.1|FL092419
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|31355458|gb|CD439815.1|CD439815
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|33100519|gb|CF060479.1|CF060479
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|33092955|gb|CF052949.1|CF052949
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCGGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211436677|gb|FL284625.1|FL284625
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCT
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCT
EST: gi|211488929|gb|FL092414.1|FL092414
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211439283|gb|FL284650.1|FL284650
EST:     GACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGGAACATACTTG                         ATCAAGGWCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGC-TCC
genomic: GACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGG-AACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|60345830|gb|DN212803.1|DN212803
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211436681|gb|FL284629.1|FL284629
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTT
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTT
EST: gi|211491801|gb|FL092416.1|FL092416
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|14191380|gb|BG833610.1|BG833610
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211042386|gb|FL284653.1|FL284653
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGNTGCTGTGGAGTGC-TC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGG-TGCTGTGGAGTGCCTC
EST: gi|14191381|gb|BG833611.1|BG833611
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|93281375|gb|EB673639.1|EB673639
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|33101185|gb|CF061145.1|CF061145
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211486039|gb|FL092391.1|FL092391
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTG
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTG
EST: gi|211439270|gb|FL284637.1|FL284637
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211439277|gb|FL284644.1|FL284644
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGGTGGCTCTTGTTG
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTG-TGGCTCTTGTTG
EST: gi|211486042|gb|FL092394.1|FL092394
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTG
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTG
EST: gi|211439278|gb|FL284645.1|FL284645
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211042388|gb|FL284655.1|FL284655
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211436680|gb|FL284628.1|FL284628
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|33093900|gb|CF053894.1|CF053894
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|6012616|gb|AW062053.1|AW062053
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211488924|gb|FL092409.1|FL092409
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211439279|gb|FL284646.1|FL284646
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211491807|gb|FL092422.1|FL092422
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTG
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTG
EST: gi|211436673|gb|FL284621.1|FL284621
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211042384|gb|FL284651.1|FL284651
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211042385|gb|FL284652.1|FL284652
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAAGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGGGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211491803|gb|FL092418.1|FL092418
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGT
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGT
EST: gi|18963341|gb|BM660381.1|BM660381
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAAGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCC
EST: gi|211436682|gb|FL284630.1|FL284630
EST:     TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTG                         ATCAGG-TCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTG
genomic: TGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 95

AATGTTCCTGTCAAAACTTATTCAAGATCACTGGAACTTCCAAAAGAGTTTGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 387

AATGTTCCTGTCAAAACTTATTCAAGATCACTGGAACTTCCAAAAGAGTTTGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 424

AATGTTCCTGTCAAAACTTATTCAAGATCACTGGAACTTCCAAAAGAGTTTGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 125

AATGTTCCTGTCAAAACTTATTCAAGATCACTGGAACTTCCAAAAGAGTTTGACGCTAGATCTGCATGGTCCCGTTGCAGCACAATTGGGAACATACTTGgtaggtttat ... gtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG
    gcctaaa  putative branch site (score: 125)
                                         tcttgtct  putative PPT
                               tagtataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttcatgagcagatcaagtaagttcaacagtctagcatatattattagtgcctaaaagagcgatgcaacatgcttgtagtataatgtcttgtctgatgacAACAGGGTCACTGTGGCTCTTGTTGGGCTTTTGGTGCTGTGGAGTGCCTCCAGGACCGTTTTTGCATTCACCTCAACATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
cttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt