1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtgctccccccttctcaaagtcaaagttatctcattcatttttttaatcaccatgtgcatcatctcctctactcctcatattgttctccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTGGCCGAACTGGCCGTGCTGGGAAGAAGGGCACTGCAATTGTGATGTACA
species | Zea mays |
transcript | GRMZM2G107984_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCTACTGATGTCGCTGCTCGTGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|91056824|gb|EB167242.1|EB167242
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|87152778|gb|DY397567.1|DY397567
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|32837236|gb|CD976914.1|CD976914
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGTGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|32837711|gb|CD977389.1|CD977389
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGTGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|32837729|gb|CD977407.1|CD977407
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGTGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|32839302|gb|CD978983.1|CD978983
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGTGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTEST: gi|71304548|gb|DR788393.1|DR788393
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGAGGATTGNATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGT-CACAGATCTEST: gi|32837093|gb|CD976771.1|CD976771
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
EST: TTGCTACTGATGTCGCTGCTCGTGGATTGGATATCCCAAATGTAGATCTG GTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTGCTCGAGGATTGGATATCCCAAATGTAGATCTGgtttgtgctc ... ccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCT
tttaatcaccatgtgcatcatctcctctactcctcatattgttctccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTGGCCGAACTGGCCGTGCTGGGAAGAAGGGCACTGCAATTGTGATGTACA
ttttaat putative branch site (score: 3)
tctcctctactcctca putative PPT
atattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgctccccccttctcaaagtcaaagttatctcattcatttttttaatcaccatgtgcatcatctcctctactcctcatattgttctccttgttcagGTGATACATTTTGAATTGCCAAACTCGTCAGAGTTGTTTGTTCACAGATCTGGCCGAACTGGCCGTGCTGGGAAGAAGGGCACTGCAATTGTGATGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG