1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atgaactggtgcatgcacgtcgtgctcgtagaattcatctaattagcatttgacatttatatctacttaacatttgtcatttatatttgggtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG
species | Zea mays |
transcript | GRMZM2G107731_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGAACTAGA-TCTCTTTGTAAGGAATTTTCACCGEST: gi|211002685|gb|FL029004.1|FL029004
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGA-CTAGAATCTCTTTGTAGGGAATTT-CAGCG
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTNCTTTGTAGGGAATTTCAGCGTEST: gi|148994670|gb|EE034191.2|EE034191
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCT-CTTTGTAGGGAATTTCAGCGT
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|71436912|gb|DR817962.1|DR817962
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|31354731|gb|CD439088.1|CD439088
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|149071351|gb|EE159746.2|EE159746
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTEST: gi|60358220|gb|DN225193.1|DN225193
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCT
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|91055771|gb|EB166189.1|EB166189
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|149081200|gb|EE170309.2|EE170309
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|149027108|gb|EE046399.2|EE046399
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCEST: gi|148961119|gb|EE011825.2|EE011825
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
gcatttgacatttatatctacttaacatttgtcatttatatttgggtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG
acttaac putative branch site (score: 79)
tccttgc putative PPT
atttatatctacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaactggtgcatgcacgtcgtgctcgtagaattcatctaattagcatttgacatttatatctacttaacatttgtcatttatatttgggtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG
- - -ctggtgc
- - - - - - atgcacg
- - - - - - - - - - cgtgctc
- - - - - - - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatttg