1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttctgcctgcatttactacctattttgccttgtagtgttttccaaatgggccttatgtttcccaatttacttctgttaattacttctttgggggcacactcttctttcctgtttcactgctagaccttgatcttgtcttataatctggtcttttctaacattgattttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCATGTTTGCACCGTATTATTTCAATGCCTACATGTCATTCCAGATGACAG
species | Zea mays |
transcript | GRMZM2G107639_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATNAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|148932368|gb|EC876010.2|EC876010
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|211307789|gb|FL085770.1|FL085770
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|211325052|gb|FL357886.1|FL357886
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|211329406|gb|FL358391.1|FL358391
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTEST: gi|211526539|gb|FL366365.1|FL366365
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGT
EST: AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|67030337|gb|CO459086.1|CO459086
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTATCEST: gi|211237919|gb|FL362192.1|FL362192
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGEST: gi|148990980|gb|EE032414.2|EE032414
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATG
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|149037081|gb|EE155270.2|EE155270
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|211023084|gb|FL313921.1|FL313921
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATEST: gi|211213774|gb|FL353738.1|FL353738
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGAT
EST: AGAACAAGCTTACCWAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTWGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATEST: gi|148931036|gb|EC873618.2|EC873618
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGAT
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|211305634|gb|FL309433.1|FL309433
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTEST: gi|211448663|gb|FL323020.1|FL323020
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATT
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGEST: gi|211136252|gb|FL346220.1|FL346220
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATG
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTRCTGGTGCAA-TCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGEST: gi|76286951|gb|DV026519.1|DV026519
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTG
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|211126683|gb|FL312966.1|FL312966
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|211010784|gb|FL361163.1|FL361163
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|211111425|gb|FL330322.1|FL330322
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTKCTGGTGCAAATCAG GCTTTTGTGAACTTGGTEST: gi|148963140|gb|EE014107.2|EE014107
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGT
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|67011573|gb|CO440322.1|CO440322
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: TGGTCACTGCTGGTGCAAATCAC GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTATCEST: gi|211260539|gb|FL346343.1|FL346343
genomic: TGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|148950038|gb|EC895570.2|EC895570
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|149112179|gb|EE295100.2|EE295100
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|149084340|gb|EE173781.2|EE173781
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|148947797|gb|EC893285.2|EC893285
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|211391856|gb|FL357117.1|FL357117
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTCEST: gi|211026505|gb|FL356245.1|FL356245
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCEST: gi|50325408|gb|CO520534.1|CO520534
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCC
EST: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCEST: gi|211050425|gb|FL364299.1|FL364299
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
gctagaccttgatcttgtcttataatctggtcttttctaacattgattttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCATGTTTGCACCGTATTATTTCAATGCCTACATGTCATTCCAGATGACAG
ttttttc CT-rich tract
taacattgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctgcctgcatttactacctattttgccttgtagtgttttccaaatgggccttatgtttcccaatttacttctgttaattacttctttgggggcacactcttctttcctgtttcactgctagaccttgatcttgtcttataatctggtcttttctaacattgattttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTCATGTTTGCACCGTATTATTTCAATGCCTACATGTCATTCCAGATGACAG
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