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...tgtaaagcgcaatgcatctagtagaagaaacgatgcattggctgtaattgataacattttattttggaagcatacattacaactgtgtctaaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCACTGTTGTGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTAT
species | Zea mays |
transcript | GRMZM2G107639_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|67030337|gb|CO459086.1|CO459086
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|211010784|gb|FL361163.1|FL361163
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGGTTGGAGAAG-TTCNNTGAA-GAAA-TGAGCCTATCCCTAAACTTGEST: gi|148947797|gb|EC893285.2|EC893285
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGG-TTGGAGAAGGTTC--TGAAAGAAAATGAGCCTATCCCTAAACTTG
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|148963140|gb|EE014107.2|EE014107
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|149112179|gb|EE295100.2|EE295100
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|149037081|gb|EE155270.2|EE155270
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|149084340|gb|EE173781.2|EE173781
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|76286951|gb|DV026519.1|DV026519
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|50325408|gb|CO520534.1|CO520534
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|148990980|gb|EE032414.2|EE032414
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCCTCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|149014921|gb|EE044649.2|EE044649
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|67011573|gb|CO440322.1|CO440322
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCAEST: gi|148931036|gb|EC873618.2|EC873618
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCA
EST: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTG ATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCT
genomic: TGACATATTAGTTGGTGGCTGCGATCCCAAGACACTTCATCCTGATGTTGgtaagatgac ... aaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCT
aattgataacattttattttggaagcatacattacaactgtgtctaaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCACTGTTGTGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTAT
ataacattttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaagcgcaatgcatctagtagaagaaacgatgcattggctgtaattgataacattttattttggaagcatacattacaactgtgtctaaaaatgcagATTGGTTGGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCACTGTTGTGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - -atgcatc
- - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - gctgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca