1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaactaagggaaaacgattaacgatcatttactgctgatcttaggaaagctttttgtcctttcttggctagctaaaacttgtgtaatcctactggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG
species | Zea mays |
transcript | GRMZM2G107575_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|211255132|gb|FL091665.1|FL091665
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: TTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|91053272|gb|EB163690.1|EB163690
genomic: TTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|78085933|gb|DV514326.1|DV514326
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|14203857|gb|BG837534.1|BG837534
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|211199934|gb|FL305445.1|FL305445
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAEST: gi|149016909|gb|EE045638.2|EE045638
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCA
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|76018012|gb|DT945182.1|DT945182
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|71427887|gb|DR808937.1|DR808937
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|78085932|gb|DV514325.1|DV514325
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTEST: gi|91052665|gb|EB163083.1|EB163083
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCT
EST: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAG GTAAAGCAGATGTTAATTGCTCTCCTA
genomic: CGTTCAAGCTATACGATATGGATGGCACAGGGTTTATTGAACGAAAGGAGgtgattttct ... actggtgcagGTTAAGCAGATGTTAATTGCTCTCCTA
aaagctttttgtcctttcttggctagctaaaacttgtgtaatcctactggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG
agctaaa putative branch site (score: 3)
tcctact putative PPT
taaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactaagggaaaacgattaacgatcatttactgctgatcttaggaaagctttttgtcctttcttggctagctaaaacttgtgtaatcctactggtgcagGTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
gaactaa
- - - - -gaaaacga
- - - - - - - - - - - - - - - actgctg