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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaaacctcttcgtacatcaattattggagttagtatttagggttgatagttgctaattttacttgtcgagcccaatgctatctgtttcatcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAAGGCGAAGCTAGTGCAGGAAATCAGGGAATGCTATCACCCTATAGATCCA

Basic information

species Zea mays
transcript GRMZM2G107491_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107491_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g68860.3 (Oryza sativa), 3'ss of exon 4
------------------------------ctgaaacctcttcgtacatcaattattggagttagtatttagggttgatagttgctaattttacttgtcgag--cccaatgctatctgtttcatcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAAGGCGAAGCTAGTGCAGGAAATCAGGGAATGCTATCACCCTATAGATCCA
                               || || |   || |||| |||||  |||| | | || | |  ||||||  ||  | ||||| ||| || ||  || |||| |  |||||||||||||| || |||  |||||||| || |||||||||||||| ||||||| ||| || ||||  || || |||||||| |                              
tttattttttgaaagtgaaaagctataacattggaatccactcttacaccaattgctggaatca-tact-aaagttgattttttgtgattttgcttttcaagGGCCAAATGATGCCTGTTTCATCTTCTGAGAGTCGACTGCAGTCCCCAGGGGCTCAACAAACCTATGGAACTTCTCAGCAAGTTGATGCCAGTGCAGGCA------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32842295|gb|CD981976.1|CD981976
EST:     ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32839671|gb|CD979352.1|CD979352
EST:     ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32920955|gb|CF025767.1|CF025767
EST:     ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32842543|gb|CD982224.1|CD982224
EST:     GTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: GTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|24934304|gb|CA452522.1|CA452522
EST:     GTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: GTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|211087415|gb|FL153990.1|FL153990
EST:     TGGTTGTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: TGGTTGTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32921366|gb|CF026178.1|CF026178
EST:     ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|76290171|gb|DV029739.1|DV029739
EST:     TGGTTGTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: TGGTTGTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32921013|gb|CF025825.1|CF025825
EST:     GTACCTCATGGCC-TGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: GTACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32839512|gb|CD979193.1|CD979193
EST:     ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
EST: gi|32920651|gb|CF025463.1|CF025463
EST:     ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCT                         GGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA
genomic: ACCTCATGGCCTTGTCCAAGTGCCGAGCTGGAATTCATATCCTgtaagttcat ... atcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagttgctaattttacttgtcgagcccaatgctatctgtttcatcttctcagGGTCAGCTGCAGTCACCTGGGGCTCAACAAACTTATGGAAGTTCACAACAAGGCGAAGCTAGTGCAGGAAATCAGGGAATGCTATCACCCTATAGATCCA
       tgctaat  putative branch site (score: 2)
                                     tctgtttcatcttctc  putative PPT
          taattttactt  TA-rich tract