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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcagatttcctagggatacaatttcttcttgtcattgttggatttattcttatcaatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTACAGAAAGTTTCATCCATGAACTAGATGAGAAG

Basic information

species Zea mays
transcript GRMZM2G107082_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 5
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 3'ss of exon 6
---------gtgagtcagatttcctagggata------caat---ttcttcttgtca----ttgttggatttattcttatcaatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTACAGAAAGTTTCATCCATGAACTAGATGAGAAG
              ||  | ||||  | || |      ||||   || |||  ||      |  ||||||| ||   | | | |  | |||||||||||  || ||||||||||| || |||||||| || |||||  ||||||| |  ||||||||||   |||||||||||
gtatgtctaacatttctaagttcccggtgagagacccgcaatcaatttttccggtggaaactcattggattgataagttttattaatacagGTGGGGAGACATTGAATTTCCTCTGCCATTTGGAAGGGTCCTCAGTTCTACAGAGAACTTCATCCATGGTTTAGATGAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211099628|gb|FL031896.1|FL031896
EST:     AGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: AGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|6851489|gb|AW352499.1|AW352499
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|32928214|gb|CF033026.1|CF033026
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
EST: gi|89759015|gb|DY687974.1|DY687974
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GGGGGGAGGTATAGATTTTCCTCTACCTT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTT
EST: gi|14243577|gb|BG841276.2|BG841276
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|32846052|gb|CD985733.1|CD985733
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
EST: gi|13177932|gb|BG349115.1|BG349115
EST:     AGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: AGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|32851220|gb|CD990901.1|CD990901
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|33093807|gb|CF053801.1|CF053801
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTA
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTA
EST: gi|32941416|gb|CF046235.1|CF046235
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTA
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTA
EST: gi|148996106|gb|EE035369.2|EE035369
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCTTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|32942668|gb|CF047487.1|CF047487
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTA
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTA
EST: gi|211123624|gb|FL002523.1|FL002523
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|33100741|gb|CF060701.1|CF060701
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
EST: gi|89758437|gb|DY687616.1|DY687616
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|6012698|gb|AW062135.1|AW062135
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGCAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|148953532|gb|EE153041.2|EE153041
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|33094495|gb|CF054489.1|CF054489
EST:     AACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
EST: gi|32928697|gb|CF033509.1|CF033509
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCCCTACCTTTTGGAAGAGT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
EST: gi|32858269|gb|CD997950.1|CD997950
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGGAGAGTACTCAGCCCTAC
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTAC
EST: gi|33104066|gb|CF064026.1|CF064026
EST:     GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAA                         GTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT
genomic: GACATGAGAGGAGAACTAGATGACACAGCAGCTTTCAAGAACTTCAAGAAgtgagtcaga ... aatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagggatacaatttcttcttgtcattgttggatttattcttatcaatcgtgcagGTGGGGAGGTATAGAATTTCCTCTACCTTTTGGAAGAGTACTCAGCCCTACAGAAAGTTTCATCCATGAACTAGATGAGAAG
                                atttattcttatcaat  TA-rich tract