1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gttcaaatgatctcaatgcttctacttttgacttcactgtgctttcaaatagctattggattccataaaatgttgatccttgtggaaaacttttttgcagTTATGCTCTTCCTGTACCTAAAGCTGAAGCTGTTGCTCAAGAGACATTGGCTGTCTGGTGCTCACTTGCTTCTCGATTGGGAGTCTGGGCTTTGAAAGCT
species | Zea mays |
transcript | GRMZM2G106931_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTGTGGTGCTCATCAAGCTGGCAGATCGCTTGCACAATATGCGGACAAT TTATGCTCTTCCTGTEST: gi|32921219|gb|CF026031.1|CF026031
genomic: CGTGTGGTGCTCATCAAGCTGGCAGATCGCTTGCACAATATGCGGACAATgtatgcaact ... ttttttgcagTTATGCTCTTCCTGT
EST: CGTGTGGTGCTCATCAAGCTGGCAGATCGCTTGCACAATATGCGGACAAT TTATGCTCTTCCTGTAC
genomic: CGTGTGGTGCTCATCAAGCTGGCAGATCGCTTGCACAATATGCGGACAATgtatgcaact ... ttttttgcagTTATGCTCTTCCTGTAC
caaatagctattggattccataaaatgttgatccttgtggaaaacttttttgcagTTATGCTCTTCCTGTACCTAAAGCTGAAGCTGTTGCTCAAGAGACATTGGCTGTCTGGTGCTCACTTGCTTCTCGATTGGGAGTCTGGGCTTTGAAAGCT
tgttgat putative branch site (score: 29)
cttttttgc putative PPT
aaaactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaatgatctcaatgcttctacttttgacttcactgtgctttcaaatagctattggattccataaaatgttgatccttgtggaaaacttttttgcagTTATGCTCTTCCTGTACCTAAAGCTGAAGCTGTTGCTCAAGAGACATTGGCTGTCTGGTGCTCACTTGCTTCTCGATTGGGAGTCTGGGCTTTGAAAGCT
- - - - - - - - tgcttct
- - - - - - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - -gctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga