1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gcctgaaccttgatttgttgtttctgttgggtttcaattctagcctacaccaacttgcttgggactaaaagactttgttgttgttgttgtacacatgcagTTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTG
species | Zea mays |
transcript | GRMZM2G106683_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAAATATCAGACAAGCCCAGGCAAAGGGAATCTGAACCAGCATTCAAG TTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGEST: gi|32836108|gb|CD975786.1|CD975786
genomic: TTGAAATATCAGACAAGCCCAGGCAAAGGGAATCTGAACCAGCATTCAAGgtttgtggtg ... acacatgcagTTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATG
EST: AAAGGGAATCTGANCCAGCATTCAAG TTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGEST: gi|50339316|gb|CO534442.1|CO534442
genomic: AAAGGGAATCTGAACCAGCATTCAAGgtttgtggtg ... acacatgcagTTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATG
EST: TTGAAATATCAGACAAGCCCAGGCAAAGGGAATCTGAACCAGCATTCAAG TTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATG
genomic: TTGAAATATCAGACAAGCCCAGGCAAAGGGAATCTGAACCAGCATTCAAGgtttgtggtg ... acacatgcagTTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATG
tacaccaacttgcttgggactaaaagactttgttgttgttgttgtacacatgcagTTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTG
gactaaa putative branch site (score: 49)
actaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctgaaccttgatttgttgtttctgttgggtttcaattctagcctacaccaacttgcttgggactaaaagactttgttgttgttgttgtacacatgcagTTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTG
gcctgaa
- - - - - - -tttgttg
- - - - - - - -tgttgtt
- - - - - - - - - - - -ctgttgg
- - - - - - - - - - - - - - - - - - - - - gcctaca