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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcgacccttaggccctcacgaactaaatcgtgtttaaccttgctctgccatcctgaatgtttattgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAGTTTCTCCAACTCTAATAATTATTGGGAAAGTGGTATCCTTGTCACCCT

Basic information

species Zea mays
transcript GRMZM2G105604_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105604_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g44050.1 (Oryza sativa), 3'ss of exon 5
gtagcgacccttaggccctcacgaactaaatcgtgtttaaccttgctctgccatcctgaatgtttattgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAGTTTCTCCAACTCTAATAATTATTGGGAAAGTGGTATCCTTGTCACCCT
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gtactgagcatt-gatcctcaccatttaaattgtgtgtggcttcagttttctgtgctgaacatttcttttgttgtagGTATTCGCCATGTTAAAGGATTTTGTGAATGAAGTCAAGTCGGAGGATCTAGTCTCTCCTACTCTGATAATTATTGGGAAGGTGGTGGCATTGTCACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83279428|gb|DV943436.1|DV943436
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|71770018|gb|DR967955.1|DR967955
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|149008993|gb|EE153743.2|EE153743
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGAGTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|149008991|gb|EE153742.2|EE153742
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|71761266|gb|DR959203.1|DR959203
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|50328370|gb|CO523496.1|CO523496
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|71762338|gb|DR960275.1|DR960275
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|4647587|gb|AI622662.1|AI622662
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: gi|86467413|gb|DY233783.1|DY233783
EST:     ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG                         GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactaaatcgtgtttaaccttgctctgccatcctgaatgtttattgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAGTTTCTCCAACTCTAATAATTATTGGGAAAGTGGTATCCTTGTCACCCT
                                    aatgtttatt  TA-rich tract