1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctgcatgcatgcatgcctatgcatgtacgtacgtacgtacgtgctgtcacttttacttgtggtaacttgctgcttgacctacacatgtttgtatctccagGCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAGGTGGGGGCGGCTCCAAGCAGAATCAGCAGCTCCACGAGGCTAGT
species | Zea mays |
transcript | GRMZM2G105494_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAG GCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAGGTGGGGGCGGCTCCEST: gi|71435603|gb|DR816653.1|DR816653
genomic: TACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAGgtccagctct ... gtatctccagGCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAGGTGGGGGCGGCTCC
EST: TACTCCTTGAAGCCATTGGGAACATCAGATTCCTCCCTAGTCAAATTGAG GCTCCGAGCTCCCCGTACGTGGEST: gi|76929547|gb|DV172057.1|DV172057
genomic: TACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAGgtccagctct ... gtatctccagGCTCTGAGCTCCCCGTACGTGG
EST: TACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAG GCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAG
genomic: TACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAGgtccagctct ... gtatctccagGCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAG
gtcacttttacttgtggtaacttgctgcttgacctacacatgtttgtatctccagGCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAGGTGGGGGCGGCTCCAAGCAGAATCAGCAGCTCCACGAGGCTAGT
tatctcc CT-rich tract
ttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcatgcatgcatgcctatgcatgtacgtacgtacgtacgtgctgtcacttttacttgtggtaacttgctgcttgacctacacatgtttgtatctccagGCTCTGAGCTCCCCGTACGTGGGCGGCAGCAATGGAGGTGGGGGCGGCTCCAAGCAGAATCAGCAGCTCCACGAGGCTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
-tgcatgc
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttt