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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaactatacctcgcaatttctactgttcttactgtgaatgtaaaaacctcttgcaaggccatcagaagctaagaactcctcacttgcaattgcaaggccatcatgcccttcggcaattctgtgcgtcccttgaaaagataaataacagtataagcttacatacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACCATAATAAACGTCGCGAGGTGGGGCCGCGCGGTCTACATAAACATCCAGA

Basic information

species Zea mays
transcript GRMZM2G104730_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104730_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 3'ss of exon 4
---gtactaactatac--ctcgcaatttctac-tgttcttactgtgaatgt-aaaaacctcttgcaaggccatcaga-agctaagaactcctcact--tgcaattgcaaggccatcatgccc---ttcggcaattctgtgcgtcccttgaaaa-----gataaataacagtataagcttacatacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACCATAATAAACGTCGCGAGGTGGGGCCGCGCGGTCTACATAAACATCCAGA
    |  |  |||| |   ||  || || |   |||     |  |  |  | |||||  ||    |       || | |  | || | || |   |  || |||     | || | ||  ||   || ||  | | |||   | | ||   |      || |   |  | | |   |||  ||   ||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| || || || || || |||||||| |
gtactgtttcctatgcagttcaaaacttatggatgtagcatcaatagacattaaaaaagtcagatatttaggacaaatatgtcagtattcattcttactgaaataagttgaccctgataacccattttggatactttgtattttctttttcatcttctgaaatggagtaattttgtcttttatttgtgcagGTTGCCAAGGAGAGTGCAGATGTCATAGTACTTGACGACAATTTCACTACTATAATAAATGTTGCAAGATGGGGTCGTGCAGTTTATATTAACATCCAAA

upper sequence: GRMZM2G104730_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 3'ss of exon 4
gtactaactatacctcgcaatttctactgttcttactgtgaatgtaaaaacctcttgcaag---gccatcagaagctaagaactcctcacttgcaattgcaaggccatcatgcccttcggcaattc--tgtgcgtcccttgaaaagataaataacagtataagcttacatacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACCATAATAAACGTCGCGAGGTGGGGCCGCGCGGTCTACATAAACATCCAGA
|||||   | | |   ||| ||   |   |    ||   | ||  | | || |     |||   |  ||      | || |  ||   | |  |  || |      |   ||  | | |  ||| |  | | | ||   ||||| |      |  | | |   |||  ||   ||||||| |||||||||||||| ||||| ||||| || ||||| || |||||||| |||||||| || || || ||||| || || || || || |||||||| |
gtactg--tttcctatgcagttcaaaacttatgaacgtagcatcaatagacattaaaaaagtcagatatttaggacgaatatgtcagtattcactcttactgaattaagttgatcct-gataatccatttttcatcttctgaaatgg-----agtaattttgtcttgtatttgtgcagGTTGCCAAGGAGAGTGCAGATGTCATAGTACTTGACGATAATTTCACAACTATAATAAATGTTGCAAGATGGGGTCGTGCAGTTTATATTAACATCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22490354|gb|BU050277.1|BU050277
EST:     CATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAG                         GTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACC
genomic: CATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAGgtactaacta ... atacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACC
EST: gi|19057956|gb|BM736623.1|BM736623
EST:     CATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAG                         GTAGCCAAGGAGAGTGCC-ATGTGATAGTGCTGGACGACA-CTTC-CAACC
genomic: CATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAGgtactaacta ... atacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACC
EST: gi|87152785|gb|DY397574.1|DY397574
EST:     CATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAG                         GTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACC
genomic: CATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAGgtactaacta ... atacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctgtgcgtcccttgaaaagataaataacagtataagcttacatacttgcagGTAGCCAAGGAGAGTGCCGATGTGATAGTGCTGGACGACAACTTCACAACCATAATAAACGTCGCGAGGTGGGGCCGCGCGGTCTACATAAACATCCAGA
                  aaaagataaataacag  TA-rich tract