ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtagctgaattactgctttaaaattttcttgggtaaccaaagcaatcaactaattgatttgttagtttcaatttttaataggtaatatccataaatatgccttctatgccgtgccattcgatttgattgtatgcctaaccctctttattttccccacctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTCTTCCTGTTGGCCCCGGTAACCTTACTTACAGAAGGTGTTAAAGTTAGTC

Basic information

species	Zea mays
transcript	GRMZM2G103047_T01
intron #	5
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G103047_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os09g12600.2 (Oryza sativa), 3'ss of exon 5

gtagctgaattactgctttaaaattttcttgggtaaccaaagcaatcaactaattgatttgttagtttcaatttttaataggtaatatccataaatatgccttctatgccgtgccattcgatttgattgtatgcctaaccctctttattttccccacctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTCTTCCTGTTGGCCCCGGTAACCTTACTTACAGAAGGTGTTAAAGTTAGTC
                                                |||     || |||  | ||     || ||    || | |   | |  ||| ||  ||              | || |||      ||||   ||||   |||||| |  | ||| ||||||||||| ||||||||||  || || || || |||||||| |||||||||||||| |||||||| |||||||| || ||||| ||||| ||||| | ||
------------------------------------------------acttgcctatctgt-ggctttttccttgaacctctattgtttgtcaccatggctcttacat----------aacttaatt------ctaatgatcttc--tttcccaatttctgatcagGAATCTCTGGACAACATTACCCTCTTCTCAATCATTACAGTGATGTCATTCTTCCTCTTGGCCCCAGTAACCTTGCTAACAGAGGGTGTCAAAGTCACTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211421922|gb|FL203902.1|FL203902

EST:     AAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: AAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|60349997|gb|DN216970.1|DN216970

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|83279029|gb|DV943037.1|DV943037

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|149070711|gb|EE159127.2|EE159127

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|71427133|gb|DR808183.1|DR808183

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|148999233|gb|EE036153.2|EE036153

EST:     AAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: AAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|76916103|gb|DV166240.1|DV166240

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|60357212|gb|DN224185.1|DN224185

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|50334493|gb|CO529619.1|CO529619

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|74235578|gb|DT643492.1|DT643492

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGANCA-CATTAATCTATTTTCGATAATTACAGTCATGTCATT
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGA-CAACATTAATCTATTTTCGATAATTACAGTCATGTCATT

EST: gi|91054475|gb|EB164893.1|EB164893

EST:     AAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: AAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|60349346|gb|DN216319.1|DN216319

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|37383666|gb|CF628857.1|CF628857

EST:     AGCAAGAAACTTATGGTG-AGAAATGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATT
genomic: AGCAAGAAACTTATGGTGAAGAAA-GAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATT

EST: gi|91054476|gb|EB164894.1|EB164894

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|83278332|gb|DV942340.1|DV942340

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|76018096|gb|DT945266.1|DT945266

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|78110414|gb|DV528826.1|DV528826

EST:     CCTTCCAGTCAAGGAATGTGTTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|101401959|gb|EB822602.1|EB822602

EST:     GGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: GGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|74235577|gb|DT643491.1|DT643491

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|4753301|gb|AI657206.1|AI657206

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|211114341|gb|FL479353.1|FL479353

EST:     AATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: AATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|78110415|gb|DV528827.1|DV528827

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|149007367|gb|EE040217.2|EE040217

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAA                         GAATCTCTCGACAACATTAATCTATTT
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTT

EST: gi|71444330|gb|DR825380.1|DR825380

EST:     CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

EST: gi|37383669|gb|CF628859.1|CF628859

EST:     CAAGGAATGTGCTAAGCAAG-AACTTTATGGTGAAGAAAGAG                         GAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC
genomic: CAAGGAATGTGCTAAGCAAGAAAC-TTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 317

GGCTGGATTTTGGAGTGCAATGGCTTCAAATGTAACCTTCCAGTCAAGGAATGTGCTAAGCAAGAAACTTATGGTGAAGAAAGAGgtagctgaat ... ctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTCTTCCTGTTGGCCCCGGTAACCTTACTTACAGAAGGTGTTAAAGTTAGTC

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 294

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 365

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 529

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

gccattcgatttgattgtatgcctaaccctctttattttccccacctgtgaccagGAATCTCTCGACAACATTAATCTATTTTCGATAATTACAGTCATGTCATTCTTCCTGTTGGCCCCGGTAACCTTACTTACAGAAGGTGTTAAAGTTAGTC