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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgacccctcctgttttttaagtacgaaataaccttcattaggtagagcaaatttgaagactgactaatcttgtggtctgttgtcgattctgcagGTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAACTTAACCAATCTCACAGACTT

Basic information

species Zea mays
transcript GRMZM2G103033_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211450628|gb|FL309615.1|FL309615
EST:     AGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCT                         GTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAA
genomic: AGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCTgtaagtgacc ... gattctgcagGTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAA
EST: gi|37425181|gb|CF650327.1|CF650327
EST:     AGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCT                         GTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAA
genomic: AGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCTgtaagtgacc ... gattctgcagGTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAA
EST: gi|211258292|gb|FL356006.1|FL356006
EST:     AGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCT                         GTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAA
genomic: AGTGGAGGTTTTCCTCATGAACTGTCGCTTTTAAGGAATCTACGGTCCCTgtaagtgacc ... gattctgcagGTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtagagcaaatttgaagactgactaatcttgtggtctgttgtcgattctgcagGTGGATGTTTGATAATTACATTGTAGGGCCTTTTCCGGCATTTATTCAGAACTTAACCAATCTCACAGACTT
                      gactaat  putative branch site (score: 2)
         aaatttgaa  TA-rich tract