1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctatctttcgatgatgggtgtgccagtgccttgcacaactgtctggtgtgactgcttgtgaaattttgcttaccttattatactcgtccttgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG
species | Zea mays |
transcript | GRMZM2G102475_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAG AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCEST: gi|261490328|gb|GO359834.1|GO359834
genomic: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAGgtaaagcaat ... tgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
EST: TGAGGAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAG AAA-TTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCEST: gi|148953283|gb|EE152769.2|EE152769
genomic: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAGgtaaagcaat ... tgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
EST: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAG AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCEST: gi|149026687|gb|EE046096.2|EE046096
genomic: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAGgtaaagcaat ... tgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
EST: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAG AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCEST: gi|93013768|gb|EB639288.1|EB639288
genomic: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAGgtaaagcaat ... tgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
EST: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAG AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCEST: gi|149045935|gb|EE047933.2|EE047933
genomic: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAGgtaaagcaat ... tgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
EST: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAG AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
genomic: TGAGAAGGAATAAGAGGATGCTGGGGCAGCTTCTTGTCGGTACATTAGAGgtaaagcaat ... tgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGC
gtgtgactgcttgtgaaattttgcttaccttattatactcgtccttgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG
tgcttac putative branch site (score: 259)
ctcgtcctt putative PPT
ttattatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatctttcgatgatgggtgtgccagtgccttgcacaactgtctggtgtgactgcttgtgaaattttgcttaccttattatactcgtccttgcaatgcagAAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -gatgatg
- - - - - - - - - - - ccagtgc
- - - - - - - - - - - - - - -cttgcac
- - - - - - - - - - - - - - - - - - - - -tctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt