1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacaatgaggagctccgcttatatatatataccttttgcctgcctttacttctgttccatacatctgcaccaaattaaacaaagaaactttgtagtcatgtaatgccgagctagttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
species | Zea mays |
transcript | GRMZM2G102161_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|32847423|gb|CD987104.1|CD987104
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|18178380|gb|BM379590.1|BM379590
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AGAATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACTTAAGGAAAAAGEST: gi|67011315|gb|CO440064.1|CO440064
genomic: AGAATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|32847744|gb|CD987425.1|CD987425
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|32845819|gb|CD985500.1|CD985500
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|16917809|gb|BM073443.1|BM073443
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|211408737|gb|FL193400.1|FL193400
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|32866292|gb|CF005974.1|CF005974
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAGEST: gi|32847872|gb|CD987553.1|CD987553
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
EST: AATCAGATGCTACTCGATCAGCTCTTTGATCTCAAAAGCAAG GAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
genomic: AATCAGATGCTACTCGACCAGCTCTTTGATCTCAAAAGCAAGgtaacaatga ... agttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
caccaaattaaacaaagaaactttgtagtcatgtaatgccgagctagttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
aattaaacaaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatgaggagctccgcttatatatatataccttttgcctgcctttacttctgttccatacatctgcaccaaattaaacaaagaaactttgtagtcatgtaatgccgagctagttttgcagGAACAAGAGTTGCAGGATCTCAACAAAGACCTAAGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA