1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagtgtattttcccacattattccctgatatgtctcattaccttggaagggaataggcattaattctaactggaacaacgatttgtaaatacacgtttcttcctagttctatttgatgcagtttggtgttctgaatttgtttgtcacgataacccttatccctgtatgctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGAGGGAAAGAAAAGTGATCAAGTCTTTGTTCC
species | Zea mays |
transcript | GRMZM2G102021_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|33285553|gb|CF075348.1|CF075348
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|86468508|gb|DY234878.1|DY234878
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|211072382|gb|FL433877.1|FL433877
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|211105116|gb|FL057782.1|FL057782
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|22546043|gb|BU098364.1|BU098364
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|149048871|gb|EE048372.2|EE048372
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|87155707|gb|DY400496.1|DY400496
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|148946111|gb|EC891405.2|EC891405
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|91876597|gb|EB406554.1|EB406554
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|113703076|gb|EE680580.1|EE680580
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|37395770|gb|CF635168.1|CF635168
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|33091816|gb|CF051810.1|CF051810
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|87156122|gb|DY400911.1|DY400911
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|26559868|gb|CA832103.1|CA832103
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATEST: gi|211503758|gb|FL479708.1|FL479708
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAAT
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|40336955|gb|CK371025.1|CK371025
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTGCGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGEST: gi|148946112|gb|EC891406.2|EC891406
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
EST: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAG CCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
genomic: CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGgcaagtgtat ... gctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTG
ttggtgttctgaatttgtttgtcacgataacccttatccctgtatgctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGAGGGAAAGAAAAGTGATCAAGTCTTTGTTCC
cgataac putative branch site (score: 63)
ctatttc putative PPT
aatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgtattttcccacattattccctgatatgtctcattaccttggaagggaataggcattaattctaactggaacaacgatttgtaaatacacgtttcttcctagttctatttgatgcagtttggtgttctgaatttgtttgtcacgataacccttatccctgtatgctatttcagCCCTTATTGCACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGAGGGAAAGAAAAGTGATCAAGTCTTTGTTCC
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