1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgtcgaacctatgacctttggctcggtgtgaaggcttcccacctccatgccaagcctgtctttattggcttcttattcatgataataatttggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTTGTACCGTCTTGGGGATGGATTTTCTCAGCACAGTGATTGAAGTTCATC
species | Zea mays |
transcript | GRMZM2G101874_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|148946917|gb|EC892199.2|EC892199
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211374024|gb|FL281477.1|FL281477
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|26456561|gb|CA828144.1|CA828144
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|60342722|gb|DN209695.1|DN209695
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211374011|gb|FL281464.1|FL281464
genomic: AGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|149058039|gb|EE156723.2|EE156723
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211374012|gb|FL281465.1|FL281465
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211376675|gb|FL281479.1|FL281479
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211376676|gb|FL281480.1|FL281480
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211374019|gb|FL281472.1|FL281472
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211374017|gb|FL281470.1|FL281470
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|91875287|gb|EB405244.1|EB405244
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTEST: gi|211376678|gb|FL281482.1|FL281482
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
EST: AGAGGCTTGAAGATTTTCGGNCTCAGCTCAAGGATCTTGAAAAAGAGAAG AGTAATAGGNTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
genomic: AGAGGCTTGAAGATTTTCGGTCTCAGCTCAAGGATCTTGAAAAAGAGAAGgtacttttct ... tggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTT
catgccaagcctgtctttattggcttcttattcatgataataatttggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTTGTACCGTCTTGGGGATGGATTTTCTCAGCACAGTGATTGAAGTTCATC
ttcttattcatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtcgaacctatgacctttggctcggtgtgaaggcttcccacctccatgccaagcctgtctttattggcttcttattcatgataataatttggtttgcagAGTAATAGGTTGGAGAAGGTTCTTGATTATGTAGGCATAGTACATGATCTTTGTACCGTCTTGGGGATGGATTTTCTCAGCACAGTGATTGAAGTTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - -gcttccc
- - - - - - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - caagcct