1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagctcaatacacacaggacctattgaatctagatatcatgccatcccatcttcctgtaattaacaatttgatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCCAATTTTGGAAGGAGTATGGAGAATCGGTGGGTTTCCGATATGTTGCTA
species | Zea mays |
transcript | GRMZM2G101698_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCEST: gi|211319523|gb|FK953030.1|FK953030
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCEST: gi|211317505|gb|FK953025.1|FK953025
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCC
EST: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAAGTTEST: gi|60341912|gb|DN208885.1|DN208885
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAA-GTT
EST: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCEST: gi|149001280|gb|EE038563.2|EE038563
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: GGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCEST: gi|211319532|gb|FK953032.1|FK953032
genomic: GGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCEST: gi|71324728|gb|DR799070.1|DR799070
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCEST: gi|33466996|gb|CF244045.1|CF244045
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: ATTTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
gaatctagatatcatgccatcccatcttcctgtaattaacaatttgatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCCAATTTTGGAAGGAGTATGGAGAATCGGTGGGTTTCCGATATGTTGCTA
taattaacaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctcaatacacacaggacctattgaatctagatatcatgccatcccatcttcctgtaattaacaatttgatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTCCAATTTTGGAAGGAGTATGGAGAATCGGTGGGTTTCCGATATGTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA